View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_97 (Length: 326)
Name: NF1111_high_97
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_97 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 32 - 300
Target Start/End: Complemental strand, 5770922 - 5770654
Alignment:
| Q |
32 |
aaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactctttttnnnnnnntatgcagaggctaattgtggttcattt |
131 |
Q |
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| T |
5770922 |
aaattggggttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagactaattgtggttcattt |
5770823 |
T |
|
| Q |
132 |
gttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgtta |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5770822 |
gttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaaaaaatattagcagggttcaaagttcatgtta |
5770723 |
T |
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| Q |
232 |
atagcactaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770722 |
atagcactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
5770654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 32 - 300
Target Start/End: Original strand, 33867127 - 33867395
Alignment:
| Q |
32 |
aaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactctttttnnnnnnntatgcagaggctaattgtggttcattt |
131 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
33867127 |
aaattggtgttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagtctaattgtggttcattt |
33867226 |
T |
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| Q |
132 |
gttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgtta |
231 |
Q |
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|||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867227 |
gttttcctgtttatacatcaacgcatgcctgatccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgtta |
33867326 |
T |
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| Q |
232 |
atagcactaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867327 |
atagcactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
33867395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 43904661 - 43904725
Alignment:
| Q |
237 |
actaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtct |
301 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
43904661 |
actaattggtccattttgcatatttgagtatggtaatgttgtaaagttgacttggtttgtagtct |
43904725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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