View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_1 (Length: 909)
Name: NF1111_low_1
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 578 - 901
Target Start/End: Original strand, 2627590 - 2627916
Alignment:
| Q |
578 |
tttgttgtgattaaatgtatcactaacgtttcgaagacnnnnnnngaagtccaattatttcagcaataatgtatgccatgagcttctccaaccaaaattt |
677 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2627590 |
tttgttgtgattaaatgtatcactaacgtttcgaagactttttttgaagtccaattatttcagcaataatgtatgccatgagcttctccaaacaaaattt |
2627689 |
T |
|
| Q |
678 |
ttggtctgctgctcaaatatga-atttcttgttatatgccagcaagagtaattcagtttctcttgagactaatggctacacaacttcagcaattttgaag |
776 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2627690 |
ttggtctgctgctcaaatatgatatttcttgttatatgctagcaa-agtaattcagtttctcttgagactaatgcctacacaacttcagcaattttgaag |
2627788 |
T |
|
| Q |
777 |
gcatatcacataaatta---gagaacaaaattgaaggattgttattcaacatccagaaagaataaaaggtcgtcctagaaaatgggagctacgatgaggt |
873 |
Q |
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||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
2627789 |
gcatatcacatgaattattagagaacaaaattgaaggaatgttattcaacatccagaaagaataaaaggtcgtcgtagaaaattggagctaccatgaggt |
2627888 |
T |
|
| Q |
874 |
tttctgtgtaacatcaaccccctatgat |
901 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
2627889 |
tttctgtgtaacatcaaccccctatgat |
2627916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 255 - 545
Target Start/End: Original strand, 2627288 - 2627584
Alignment:
| Q |
255 |
tccataacctcttctaaacactctaccaagtacttatttcagtaaataagctgatcaaagtaggccttcaagcatcaactaat----agggggtcaaggc |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| || |
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| T |
2627288 |
tccataacctcttctaaacactctaccaagtacttatttcagtaaataagctgatcaaaataggcctttaagcatcaactaattaatagggggtcaatgc |
2627387 |
T |
|
| Q |
351 |
ctatcaaagaattctgcataggaaatagcaatttcccaacttactcatttcttaggatgtattaaacaggta--annnnnnnatagttaagtcatatttg |
448 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
2627388 |
ctatcaaagaattctgcatagcaaatagcaatttcccaacttactcatttcttaggatgtattaaacaagtactttttttttatagttaagtcatatttg |
2627487 |
T |
|
| Q |
449 |
gttctactaacttcaaattttgaaggttaaaatttggttaatttttaatgaaatgttgtgactactagattaaatgagaaaataagttcctaaacat |
545 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627488 |
gttctactaacttcaaattttgaaggttaaaatttggttaatttttaatgaaatgttgtgactactagattaaatgagaaaataagttcctaaacat |
2627584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 2627031 - 2627239
Alignment:
| Q |
41 |
aaagtcttttaccttctgtttggatgaatgttgcacttcaacgatgttcagaatttagaactacattcttccttttatttaggctctgttggggtaaata |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2627031 |
aaagtcttttaccttctgtttggatgaatgttgcacttcaacgatgttcagaatttagaactacattcttccttttatttaggctctgttggggtaaaca |
2627130 |
T |
|
| Q |
141 |
agttaatgaagcgcttatagtataagcgctttttatataagtgtgttatataatttatatctaaaacaagataaaataaattcaaattgttttcatatac |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627131 |
agttaatgaagcgcttatagtataagcgctttttatataagtgtgttatataatttatatctaaaacaagataaaataaattcaaattgttttcatatat |
2627230 |
T |
|
| Q |
241 |
gctaaaagt |
249 |
Q |
| |
|
||||||||| |
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|
| T |
2627231 |
gctaaaagt |
2627239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 498
Target Start/End: Complemental strand, 2557976 - 2557924
Alignment:
| Q |
446 |
ttggttctactaacttcaaattttgaaggttaaaatttggttaatttttaatg |
498 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2557976 |
ttggttctactaactttaagttttgaatgttaaaatttggttagtttttaatg |
2557924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 832
Target Start/End: Complemental strand, 2553591 - 2553486
Alignment:
| Q |
727 |
attcagtttctcttgagactaatggctacacaacttcagcaattttgaaggcatatcacataaattagagaacaaaattgaaggattgttattcaacatc |
826 |
Q |
| |
|
||||| |||||| | |||||||||||||| ||||||| | | | |||| || |||||||||| | ||||| |||| |||||| |||||||||||||| |
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| T |
2553591 |
attcaatttctcataagactaatggctacgcaacttctgtatcctagaagccaaatcacataaactttagaacgaaatagaaggagtgttattcaacatc |
2553492 |
T |
|
| Q |
827 |
cagaaa |
832 |
Q |
| |
|
|||||| |
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|
| T |
2553491 |
cagaaa |
2553486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 13949957 - 13949908
Alignment:
| Q |
200 |
tctaaaacaagataaaataaattcaaattgttttcatatacgctaaaagt |
249 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |||| |||| |
|
|
| T |
13949957 |
tctataacaagataaaataaagtcaaattgttttcatataagctataagt |
13949908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 233
Target Start/End: Complemental strand, 2466127 - 2465999
Alignment:
| Q |
105 |
attcttccttttatttaggctctgttggggtaaataagttaatgaagcgcttatagtataagcgctttttatataagtg-tgttatataatttatatcta |
203 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||| | ||||| |||| | |||||| ||| |||||||||||| |||| | | ||||| |||| |||| |
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|
| T |
2466127 |
attcttccttgtatttaggctttgtttaggtaaaaaccttaattaagcacatatagtctaaacgctttttatattagtgcttatgtataagttat-tcta |
2466029 |
T |
|
| Q |
204 |
aaacaagataaaataaattcaaattgtttt |
233 |
Q |
| |
|
||||||||||| | ||||||| ||||||| |
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|
| T |
2466028 |
taacaagataaattcaattcaatttgtttt |
2465999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 441 - 576
Target Start/End: Original strand, 39537878 - 39538017
Alignment:
| Q |
441 |
catatttggttctactaacttcaaattttgaaggttaaaatttggttaatttttaatgaaatgttgtgactacta----gattaaatgagaaaataagtt |
536 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||| || |||| | ||||| |||| |
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|
| T |
39537878 |
catatttggttccactaacttcaagttttgaaggttaaaatttggttacattttaatcaaactttgtgactactacattgaataaaagtgaaaaagagtt |
39537977 |
T |
|
| Q |
537 |
cctaaacatggcaccggattttcattgggatagctataat |
576 |
Q |
| |
|
| ||| ||| ||||| || | ||||||||||||||||||| |
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|
| T |
39537978 |
cataagcatagcaccagaatctcattgggatagctataat |
39538017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 6509426 - 6509372
Alignment:
| Q |
190 |
ataatttatatctaaaacaagataaaataaattcaaattgttttcatatacgcta |
244 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||||||||| || ||||| |||| |
|
|
| T |
6509426 |
ataagttatatctataacaagataaaataaagtcaaattgtatttatataagcta |
6509372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 22691628 - 22691594
Alignment:
| Q |
205 |
aacaagataaaataaattcaaattgttttcatata |
239 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
22691628 |
aacaagataacataaattcaaattgttttcatata |
22691594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 46825057 - 46825094
Alignment:
| Q |
202 |
taaaacaagataaaataaattcaaattgttttcatata |
239 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
46825057 |
taaaaaaagataaaataaagtcaaattgttttcatata |
46825094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 11513863 - 11513904
Alignment:
| Q |
208 |
aagataaaataaattcaaattgttttcatatacgctaaaagt |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| |||| |
|
|
| T |
11513863 |
aagataaaataaagtcaaattgttttcatataagctataagt |
11513904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 30371113 - 30371154
Alignment:
| Q |
208 |
aagataaaataaattcaaattgttttcatatacgctaaaagt |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| |||| |
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|
| T |
30371113 |
aagataaaataaactcaaattgttttcatataagctataagt |
30371154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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