View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_10 (Length: 565)

Name: NF1111_low_10
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_10
NF1111_low_10
[»] chr1 (5 HSPs)
chr1 (205-548)||(30506312-30506656)
chr1 (72-144)||(30506718-30506788)
chr1 (485-541)||(36775861-36775916)
chr1 (496-543)||(15492194-15492240)
chr1 (208-243)||(37848559-37848594)
[»] chr4 (6 HSPs)
chr4 (487-543)||(47158139-47158194)
chr4 (382-425)||(22305841-22305884)
chr4 (208-242)||(42815408-42815442)
chr4 (210-242)||(6290466-6290498)
chr4 (495-543)||(9713827-9713874)
chr4 (206-242)||(47014943-47014979)
[»] chr5 (1 HSPs)
chr5 (208-251)||(42225799-42225842)
[»] chr7 (2 HSPs)
chr7 (208-249)||(42640840-42640881)
chr7 (485-541)||(1749288-1749343)
[»] chr6 (1 HSPs)
chr6 (485-542)||(28981067-28981123)
[»] scaffold0662 (1 HSPs)
scaffold0662 (206-242)||(1082-1118)
[»] scaffold0603 (1 HSPs)
scaffold0603 (446-541)||(7568-7660)
[»] chr3 (1 HSPs)
chr3 (206-242)||(7867742-7867778)
[»] chr2 (1 HSPs)
chr2 (487-543)||(14955424-14955479)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 205 - 548
Target Start/End: Complemental strand, 30506656 - 30506312
Alignment:
Q  205 cttaaaagttgttacaaaatagttttacaaatatcattattcaaaatcctttttcttcttccgtattacttattttgacaacttttcagttgtccaacac 304  Q
    |||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30506656 cttaaaagttgttacaaaatggttttacagctatcattattcaaagtcctttttcttcttccgtattacttattttgacaacttttcagttgtccaacac 30506557  T
Q  305 ttaatatttattcgatacaagtactatttaaacacaccatatcannnnnnnngtctctaatatcgatcctagttgtttagtgagagaaactatatttttt 404  Q
    | ||||||||||||| |||||||||||||||||| |||||||||          ||||||||| |||||||||||||||||||||||||||||||||| |    
T  30506556 tcaatatttattcgacacaagtactatttaaacaaaccatatcatttttttc--ctctaatattgatcctagttgtttagtgagagaaactatattttct 30506459  T
Q  405 ctttaagttctatttgtcctttgttcatcgaaaatatgtggtttaggtcattttttgatctataatcac----taagccgcatttcttttttctctttct 500  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||    |||||||||||||||||||||||||||    
T  30506458 ctttaagttctatttgtcctttgttcattgaaaatatgtggtttaggtcattttttga-ctgtaatcactaagtaagccgcatttcttttttctctttct 30506360  T
Q  501 ttcaattctaaatagatgatttacacatatatcaagttttttcctatg 548  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  30506359 ttcaattctaaataggtgattttcacatatatcaagttttttcctatg 30506312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 30506788 - 30506718
Alignment:
Q  72 ccacataattcaaaagaaaattgactgtacatttgaacaattacatctcttatactttatattttgtttctac 144  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  30506788 ccacataattcaaaagaaaattgactgtac-tttgaacaattacatctcttatac-ttatattttgtttctac 30506718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 541
Target Start/End: Complemental strand, 36775916 - 36775861
Alignment:
Q  485 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 541  Q
    ||||||||| |||||||||||| ||||||| ||||||| |||||| |||||||||||    
T  36775916 tcttttttccctttctttcaat-ctaaataaatgattttcacatacatcaagttttt 36775861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 15492194 - 15492240
Alignment:
Q  496 tttctttcaattctaaatagatgatttacacatatatcaagttttttc 543  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  15492194 tttctttcaat-ctaaataaatgattttcacatatatcaagttttttc 15492240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 37848559 - 37848594
Alignment:
Q  208 aaaagttgttacaaaatagttttacaaatatcatta 243  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37848559 aaaagttgttacaaaatagttatacaaatatcatta 37848594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 47158139 - 47158194
Alignment:
Q  487 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttc 543  Q
    ||||||| ||||||||||||| ||||||  |||||| ||||||||||||||||||||    
T  47158139 ttttttcactttctttcaatt-taaataagtgatttccacatatatcaagttttttc 47158194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 425
Target Start/End: Complemental strand, 22305884 - 22305841
Alignment:
Q  382 tagtgagagaaactatattttttctttaagttctatttgtcctt 425  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||    
T  22305884 tagtgagagaaactatattttctctttaagttctctttttcctt 22305841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 42815442 - 42815408
Alignment:
Q  208 aaaagttgttacaaaatagttttacaaatatcatt 242  Q
    ||||||||||||||||||||| |||||||||||||    
T  42815442 aaaagttgttacaaaatagttgtacaaatatcatt 42815408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 6290498 - 6290466
Alignment:
Q  210 aagttgttacaaaatagttttacaaatatcatt 242  Q
    ||||||||||||||||||| |||||||||||||    
T  6290498 aagttgttacaaaatagttgtacaaatatcatt 6290466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 9713827 - 9713874
Alignment:
Q  495 ctttctttcaattctaaatagatgatttacacatatatcaagttttttc 543  Q
    |||||||||||| |||||||  |||||| ||||||||||||||||||||    
T  9713827 ctttctttcaat-ctaaataagtgatttccacatatatcaagttttttc 9713874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 47014979 - 47014943
Alignment:
Q  206 ttaaaagttgttacaaaatagttttacaaatatcatt 242  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  47014979 ttaaaagttgtcacaaaatagttgtacaaatatcatt 47014943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 42225799 - 42225842
Alignment:
Q  208 aaaagttgttacaaaatagttttacaaatatcattattcaaaat 251  Q
    ||||||||||||||||| |||||||||||||||||  |||||||    
T  42225799 aaaagttgttacaaaatggttttacaaatatcatttctcaaaat 42225842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 42640881 - 42640840
Alignment:
Q  208 aaaagttgttacaaaatagttttacaaatatcattattcaaa 249  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  42640881 aaaagttgttagaaaatagttgtacaaatatcatttttcaaa 42640840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 541
Target Start/End: Complemental strand, 1749343 - 1749288
Alignment:
Q  485 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 541  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||| |||||||||||    
T  1749343 tcttttttccctttctttcaat-ctaaataagtgattttcacatacatcaagttttt 1749288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 542
Target Start/End: Original strand, 28981067 - 28981123
Alignment:
Q  485 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagtttttt 542  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||||||||||| ||||    
T  28981067 tcttttttccctttctttcaat-ctaaataagtgatttccacatatatcaagtgtttt 28981123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 1118 - 1082
Alignment:
Q  206 ttaaaagttgttacaaaatagttttacaaatatcatt 242  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  1118 ttaaaagttgtcacaaaatagttgtacaaatatcatt 1082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 541
Target Start/End: Original strand, 7568 - 7660
Alignment:
Q  446 tttaggtcattttttgatctataatcactaagccgcatttcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 541  Q
    ||||||||||||||||| ||| ||||||| | | |||  ||||||  | ||||||||||||| ||||||  || ||| ||||||||||||||||||    
T  7568 tttaggtcattttttgacctagaatcactcatctgca--tcttttacccctttctttcaatt-taaataagtggttttcacatatatcaagttttt 7660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 7867742 - 7867778
Alignment:
Q  206 ttaaaagttgttacaaaatagttttacaaatatcatt 242  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  7867742 ttaaaagttgtcacaaaatagttgtacaaatatcatt 7867778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 14955424 - 14955479
Alignment:
Q  487 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttc 543  Q
    ||||| |||||||||||||| |||||||  |||||| |||||| |||||||||||||    
T  14955424 tttttcctctttctttcaat-ctaaataagtgatttccacatacatcaagttttttc 14955479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University