View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_104 (Length: 349)
Name: NF1111_low_104
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_104 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 73 - 256
Target Start/End: Original strand, 13797307 - 13797490
Alignment:
| Q |
73 |
gagaagaagttaggattatgagaaaaaacagcttacaacagattgcatatattagcactttacataccttgagtgaaatggaattcattagcatcaacnn |
172 |
Q |
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| T |
13797307 |
gagaagaagttaggattatgagaaaaaacagcttacaacagattgcatatattagcactttacataccttgagtgaaatggaattcattagcatcaactt |
13797406 |
T |
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| Q |
173 |
nnnnnnataatcaaactaatctattcaattccattccatcatacaatatcaatccaaacatagccttaaaactacagaagacta |
256 |
Q |
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| T |
13797407 |
ttttttataatcaaactaatctattcaattccattccatcatacactatcaatccaaacatagccttaaaactacagaagacta |
13797490 |
T |
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