View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_105 (Length: 348)
Name: NF1111_low_105
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 82 - 270
Target Start/End: Original strand, 16000429 - 16000617
Alignment:
| Q |
82 |
gtatggacttgaatacaattgtggctgatatgggagtagaattgaaggctaagtacgacaagtattggggtaatgttgtaaaaatgaactagttcttata |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
16000429 |
gtatggacttgaatacaattgtggctgatatgggagtagaaatgaaggccaagtacgacaagtattggggtaatgttgtaaaaatgaaccaattcttata |
16000528 |
T |
|
| Q |
182 |
ctttggagtaatatttgatccttggtataagtttgagtacattgagtggtcttttagtgatttgtatggtgccggtagtgaaatagcaa |
270 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
16000529 |
ctttggagtaatatttgatcctaggtataagtttgagtacattgagtggtcttttagtgatttgtatggtgctggtagtgaaatggcaa |
16000617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 82 - 270
Target Start/End: Complemental strand, 6838380 - 6838192
Alignment:
| Q |
82 |
gtatggacttgaatacaattgtggctgatatgggagtagaattgaaggctaagtacgacaagtattggggtaatgttgtaaaaatgaactagttcttata |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
6838380 |
gtatggacttgaatacaattgtggctgatatgggagtagaaatgaaggccaagtacgacaagtattggggtaatgttgtaaaaatgaaccaattcttata |
6838281 |
T |
|
| Q |
182 |
ctttggagtaatatttgatccttggtataagtttgagtacattgagtggtcttttagtgatttgtatggtgccggtagtgaaatagcaa |
270 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
6838280 |
ctttggagtaatatttgatcctaggtataagtttgggtacattgagtggtcttttaatgatttgtatggtgctggtagtgatatagcaa |
6838192 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 82 - 270
Target Start/End: Original strand, 22598064 - 22598252
Alignment:
| Q |
82 |
gtatggacttgaatacaattgtggctgatatgggagtagaattgaaggctaagtacgacaagtattggggtaatgttgtaaaaatgaactagttcttata |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
22598064 |
gtatggacttgaatacaattgtggctgatatgggagtagaaatgaaggccaagtacgacaagtattggggtaatgttgtaaaaatgaaccaattcttata |
22598163 |
T |
|
| Q |
182 |
ctttggagtaatatttgatccttggtataagtttgagtacattgagtggtcttttagtgatttgtatggtgccggtagtgaaatagcaa |
270 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
22598164 |
ctttggagtaatatttgatcctaggtataagtttgggtacattgagtggtcttttaatgatttgtatggtgctggtagtgatatagcaa |
22598252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 82 - 270
Target Start/End: Original strand, 22347515 - 22347703
Alignment:
| Q |
82 |
gtatggacttgaatacaattgtggctgatatgggagtagaattgaaggctaagtacgacaagtattggggtaatgttgtaaaaatgaactagttcttata |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
22347515 |
gtatggacttgaatacaattgtggctgatatgggagtagaaatgaaggccaagtacgacaagtattggggtaatgttgtaaaaatgaaccaattcttata |
22347614 |
T |
|
| Q |
182 |
ctttggagtaatatttgatccttggtataagtttgagtacattgagtggtcttttagtgatttgtatggtgccggtagtgaaatagcaa |
270 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||| |||| |
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| T |
22347615 |
atttggagtaatatttgatcctaggtataagtttgggtacattgagtggtcttttaatgatttgtatggtgctggtggtgaaatggcaa |
22347703 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 21282359 - 21282241
Alignment:
| Q |
132 |
aagtacgacaagtattggggtaatgttgtaaaaatgaactagttcttatactttggagtaatatttgatccttggtataagtttgagtacattgagtggt |
231 |
Q |
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||||| || |||||||||| ||| |||| ||||||||| | || | || ||||||||||||||||||| | |||| |||||||| || | |||||||| |
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| T |
21282359 |
aagtatgataagtattgggaaaatattgtgaaaatgaaccaattactttattttggagtaatatttgatcttaggtacaagtttgaatataatgagtggt |
21282260 |
T |
|
| Q |
232 |
cttttagtgatttgtatgg |
250 |
Q |
| |
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| ||| ||||||||||||| |
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| T |
21282259 |
catttggtgatttgtatgg |
21282241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 13308020 - 13308179
Alignment:
| Q |
88 |
acttgaatacaattgtggctgatatgggagtagaattgaaggctaagtacgacaagtattggggtaatgttgtaaaaatgaactagttcttatactttgg |
187 |
Q |
| |
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|||||||||| |||||||| ||||||||| | |||||| || || || ||||||||||| |||||||| ||||||||| | || | || ||||| |
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| T |
13308020 |
acttgaatactgttgtggcttcaatgggagtatatatgaaggaaaaatatgataagtattgggggaatgttgtgaaaatgaaccaattgctttattttgg |
13308119 |
T |
|
| Q |
188 |
agtaatatttgatccttggtataagtttgagtacattgagtggtcttttagtgatttgta |
247 |
Q |
| |
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||| |||||||| ||| |||| || ||||| || ||||||||||| ||| |||||||||| |
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| T |
13308120 |
agtcatatttgaccctaggtacaaatttgaatatattgagtggtcatttggtgatttgta |
13308179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 14595833 - 14595694
Alignment:
| Q |
111 |
atgggagtagaattgaaggctaagtacgacaagtattggggtaatgttgtaaaaatgaactagttcttatactttggagtaatatttgatccttggtata |
210 |
Q |
| |
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||||||||| | |||||| ||||| || ||||||||||| |||||||| ||||||||| | || | || |||||||| |||||| ||| |||| | |
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| T |
14595833 |
atgggagtatatatgaaggaaaagtatgataagtattgggggaatgttgtgaaaatgaaccaattgctttattttggagtctaatttgaccctaggtaca |
14595734 |
T |
|
| Q |
211 |
agtttgagtacattgagtggtcttttagtgatttgtatgg |
250 |
Q |
| |
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| T |
14595733 |
aatttgaatatattgagtggtcatttggtgatttgtatgg |
14595694 |
T |
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