View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_107 (Length: 345)

Name: NF1111_low_107
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_107
NF1111_low_107
[»] chr3 (3 HSPs)
chr3 (13-301)||(43732157-43732445)
chr3 (73-219)||(43732067-43732212)
chr3 (237-288)||(43732067-43732118)
[»] chr2 (6 HSPs)
chr2 (13-301)||(18138865-18139155)
chr2 (15-146)||(9071497-9071630)
chr2 (224-288)||(18138762-18138826)
chr2 (73-137)||(18138775-18138838)
chr2 (101-202)||(9071594-9071695)
chr2 (224-288)||(9071671-9071735)
[»] chr8 (3 HSPs)
chr8 (13-301)||(5336972-5337265)
chr8 (73-224)||(5337205-5337355)
chr8 (237-280)||(5337312-5337355)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 43732157 - 43732445
Alignment:
Q  13 aatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttnnnnnnncacgtcaattaaacttttctaaacaacggcaaaaaagagcaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  43732157 aatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttaaaaaaacacgtcaattaaacttttctaaacaacggcaaaaaagagcaat 43732256  T
Q  113 gtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaagaattttcctact 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43732257 gtaaaggaagtgcatcaataaacaaaaacaccacagaaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaagaaatttcctact 43732356  T
Q  213 tacaaaataacaaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgcggtataagaaaat 301  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43732357 tacaaaataacaaaaacatgcaaggtcaattaaacttgtctaaatagcggcaaaaagagcgttgtaaacaaagtgcggtataagaaaat 43732445  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 43732067 - 43732212
Alignment:
Q  73 gtcaattaaacttttctaaacaacggcaaaaaagagcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcata 172  Q
    ||||||||||||| |||||| | ||||||||| ||||| |||||| ||||||||||||||||||| || | |||| |||||||   | | || || ||||    
T  43732067 gtcaattaaacttgtctaaatagcggcaaaaa-gagcattgtaaacgaagtgcatcaataaacaataaaaacacagaaactaacaaacaacaatatcata 43732165  T
Q  173 tgaccttcatatgtgaatcaatctaaagaattttcctacttacaaaa 219  Q
    |||||||  |||||||||| |||||||||| |||  |||||| ||||    
T  43732166 tgaccttagtatgtgaatcgatctaaagaaatttattacttaaaaaa 43732212  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 43732067 - 43732118
Alignment:
Q  237 gtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgc 288  Q
    ||||||||||||| |||||||||||||||||||||| |||||||| ||||||    
T  43732067 gtcaattaaacttgtctaaatagcggcaaaaagagcattgtaaacgaagtgc 43732118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 18138865 - 18139155
Alignment:
Q  13 aatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttnnnnnnn-cacgtcaattaaacttttctaaacaacggcaaaaaagagcaa 111  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||| ||| ||||||||||||    
T  18138865 aatatcatatgactttagtatgtgaatcgatctaaaaaaatttattacttaaaaaaaacacgtcaattaaacttttctaaacagcggaaaaaaagagcaa 18138964  T
Q  112 tgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaagaattttcctac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  18138965 tgtaaaggaagtgcatcaataaacaaaaacaccacataaactaacgaagagcattagcatatgaccttcatatgtgaatcaatctaaagaaacttcctac 18139064  T
Q  212 -ttacaaaataacaaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgcggtataagaaaat 301  Q
     ||| ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18139065 tttaaaaaataataaaaacatgcaaggtcaatttaacttgtctaaatagcggcaaaaagagcgttgtaaacaaagtgcagtataagaaaat 18139155  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 9071630 - 9071497
Alignment:
Q  15 tatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttnnnnnnn--cacgtcaattaaacttttctaaacaacggcaaaaaagagcaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||    
T  9071630 tatcatatgaccttagtatgtgaatcgatctaaagaaatttattattaaaaaaaaaacacgtcaattaaacttttctaaacaacggcaaaaaagagcaat 9071531  T
Q  113 gtaaaggaagtgcatcaataaacaaaaacaccac 146  Q
    ||||||||||||||||||||||||||||||||||    
T  9071530 gtaaaggaagtgcatcaataaacaaaaacaccac 9071497  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 18138762 - 18138826
Alignment:
Q  224 aaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgc 288  Q
    ||||| |||||  ||||||||||||| |||||||||||||||||||||| |||||||| ||||||    
T  18138762 aaaaaaatgcaatgtcaattaaacttctctaaatagcggcaaaaagagcattgtaaacgaagtgc 18138826  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 18138775 - 18138838
Alignment:
Q  73 gtcaattaaacttttctaaacaacggcaaaaaagagcaatgtaaaggaagtgcatcaataaacaa 137  Q
    ||||||||||||| |||||| | ||||||||| ||||| |||||| |||||||||||||||||||    
T  18138775 gtcaattaaacttctctaaatagcggcaaaaa-gagcattgtaaacgaagtgcatcaataaacaa 18138838  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 9071695 - 9071594
Alignment:
Q  101 aaaaagagcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaag 200  Q
    |||||||||| |||||| ||||||||||||||||||| || |  ||| |||||||   | | || || |||||||||||  |||||||||| ||||||||    
T  9071695 aaaaagagcattgtaaacgaagtgcatcaataaacaataaaaatacagaaactaacaaacaacagtatcatatgaccttagtatgtgaatcgatctaaag 9071596  T
Q  201 aa 202  Q
    ||    
T  9071595 aa 9071594  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 9071735 - 9071671
Alignment:
Q  224 aaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgc 288  Q
    ||||| |||||  |||||||||||||  |||||||||| |||||||||| |||||||| ||||||    
T  9071735 aaaaaaatgcaatgtcaattaaacttcactaaatagcgtcaaaaagagcattgtaaacgaagtgc 9071671  T

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Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 5337265 - 5336972
Alignment:
Q  13 aatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttnnnnnnn--cacgtcaattaaactttt-ctaaacaacggcaaaaaa-gag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||||||||||| |||    
T  5337265 aatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttaaaaaaaaacacgtcaattaaactttttctaaacaacggcaaaaaaagag 5337166  T
Q  109 caatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaagaattttcc 208  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| || |||||    
T  5337165 caatgtaaaggaagtgcatcaataaacaaaaaaactacagaaactaatggagagcattaacatatgacctttatatgtgaatcaatctaaataaatttcc 5337066  T
Q  209 tac-ttacaaaataacaaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgcggtataagaaaat 301  Q
    ||| ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  5337065 tactttaaaaaataataaaaacatgcaaggtcaattaaacttgtctaaatagcggcaaaaagagtgttgtaaacaaagtgaggtataagaaaat 5336972  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 5337355 - 5337205
Alignment:
Q  73 gtcaattaaacttttctaaacaacggcaaaaaagagcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcata 172  Q
    ||||||||||||| |||||| | ||| ||||| ||||| ||||||  |||||||||||||||||| || | |||| |||||||   | | || || ||||    
T  5337355 gtcaattaaacttctctaaatagcgggaaaaa-gagcattgtaaattaagtgcatcaataaacaataaaaacacagaaactaacaaacaacaatatcata 5337257  T
Q  173 tgaccttcatatgtgaatcaatctaaagaattttcctacttacaaaataaca 224  Q
    |||||||  |||||||||| |||||||||| |||  |||||| |||| ||||    
T  5337256 tgaccttagtatgtgaatcgatctaaagaaatttattacttaaaaaaaaaca 5337205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 5337355 - 5337312
Alignment:
Q  237 gtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaa 280  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||    
T  5337355 gtcaattaaacttctctaaatagcgggaaaaagagcattgtaaa 5337312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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