View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_109 (Length: 345)

Name: NF1111_low_109
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_109
NF1111_low_109
[»] chr7 (2 HSPs)
chr7 (112-262)||(38673057-38673207)
chr7 (113-208)||(11916552-11916649)
[»] chr8 (2 HSPs)
chr8 (112-211)||(15888758-15888857)
chr8 (117-208)||(43187124-43187215)
[»] chr2 (1 HSPs)
chr2 (113-208)||(9372872-9372965)
[»] chr4 (1 HSPs)
chr4 (165-207)||(41764198-41764240)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 112 - 262
Target Start/End: Original strand, 38673057 - 38673207
Alignment:
Q  112 tagagtataaagtaacagtgtaaacaaatgggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcatttttg 211  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  38673057 tagagtataaagtaacagtgtaaacaaatgggaaatacattataattatatagtggtgtctgtattgtgtttaaaaaattgtgttcatttatcatttttg 38673156  T
Q  212 aatgagcttatgatcattttagttgattataatagcttagagtctaaattg 262  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38673157 aatgagcttatgatcattttagttgattatagtagcttagagtctaaattg 38673207  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 11916552 - 11916649
Alignment:
Q  113 agagtataaagtaacagtgtaaacaaat--gggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcattt 208  Q
    ||||||||||||||||||||||| |||   |||||||||  | ||||||||  |||||||||||||||||| ||||||| |||| | |||||||||||    
T  11916552 agagtataaagtaacagtgtaaaaaaaaaagggaaataccttataattatacggtggtgtctgtattgtgtctaaaaaaatgtgtcaatttatcattt 11916649  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 15888857 - 15888758
Alignment:
Q  112 tagagtataaagtaacagtgtaaacaaatgggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcatttttg 211  Q
    ||||||||||||||| ||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  15888857 tagagtataaagtaaaagtgtaaacaaatggaaaataccgtataattatatagtggtgtctgtattgtgtttaaaaaattgtgttcatttatcatttttg 15888758  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 43187215 - 43187124
Alignment:
Q  117 tataaagtaacagtgtaaacaaatgggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcattt 208  Q
    ||||||||||||||||||| ||||| ||||| |  | |||||||| ||||||||||||||| || ||||||||||||| |||||||||||||    
T  43187215 tataaagtaacagtgtaaagaaatgagaaattccgtataattatacagtggtgtctgtattatgcttaaaaaattgtgtccatttatcattt 43187124  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 9372872 - 9372965
Alignment:
Q  113 agagtataaagtaacagtgtaaacaaatgggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcattt 208  Q
    ||||||||||||||||||||||| ||| |||||||||  | ||||||||  |||||||||||||||||| ||||| | |||| |||||||||||||    
T  9372872 agagtataaagtaacagtgtaaa-aaaagggaaataccgtataattatacggtggtgtctgtattgtgtctaaaata-tgtgtccatttatcattt 9372965  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 41764198 - 41764240
Alignment:
Q  165 tggtgtctgtattgtgtttaaaaaattgtgcccatttatcatt 207  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||    
T  41764198 tggtgtctgtattgtgtttgaaaatttgtgtccatttatcatt 41764240  T

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