View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_11 (Length: 555)
Name: NF1111_low_11
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 103 - 554
Target Start/End: Complemental strand, 26454750 - 26454296
Alignment:
| Q |
103 |
agtattgacataatgataattgatggtgaagaagaa---ataatccaaaatgatgaaaacatatgaagacaagagatgtggtcgtgatgataatcaatca |
199 |
Q |
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| T |
26454750 |
agtattgacataatgataattgatggtgaagaagaagaaataatccaaaatgatgacaacatatgaagacaagagatgtggtcgtgatgataatcaatca |
26454651 |
T |
|
| Q |
200 |
tagtattttttagcataatttaggagacattttagagtgtttctagcaagttataattcattttagtcaaatttatgtaaataatccaatggttgggctt |
299 |
Q |
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| T |
26454650 |
tagtattttttagcataatttaggagacattttagagtgtttctagcaagttataattcattttagtcaaatttatgtaaataatccaatggttgggctt |
26454551 |
T |
|
| Q |
300 |
gtgatagtaatttaaagcacaaggccttgaaccacaacaaatcacctaaaacaaacaactatgtggtcatgctacactttttataagatcaatcaagtga |
399 |
Q |
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| T |
26454550 |
gtgatagtaatttaaagcacaaggccttgaaccacaacaaatcacctaaaacaaacaactatggggtcatgctacactttttataagatcaatcaagtga |
26454451 |
T |
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| Q |
400 |
tttcttgatgtatagttagcacataccttttgttgatgagaaatagaacaagagatgaagaattgagaaaatacgagctactgccttatgttgaacgggt |
499 |
Q |
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| T |
26454450 |
tttcttgatgtatagttagcacataccttttgttgatgagaaatagaacaagagatgaagaattgagaaaatacgagctactgccttatgtcgaacgggt |
26454351 |
T |
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| Q |
500 |
gctagtagccacgcatcgcgcaaccataaagaaagataaagtgtacaattaagtg |
554 |
Q |
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| T |
26454350 |
gctaggagccacgcatcgcgcaaccataaagaaagataaagtgtacaattaagtg |
26454296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 344
Target Start/End: Complemental strand, 24455396 - 24455280
Alignment:
| Q |
228 |
attttagagtgtttctagcaagttataattcattttagtcaaatttatgtaaataatccaatggttgggcttgtgatagtaatttaaagcacaaggcctt |
327 |
Q |
| |
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|||||||||| ||| ||||| ||||| | | ||||| || | ||||||||| |||| |||||| ||| | || || |||||||| |||||||||||||| |
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| T |
24455396 |
attttagagtttttttagcaggttatcaatttttttaatcgagtttatgtaactaattcaatggatggtcatgggaaagtaatttgaagcacaaggcctt |
24455297 |
T |
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| Q |
328 |
gaaccacaacaaatcac |
344 |
Q |
| |
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| T |
24455296 |
gaaccacgtcaaatcac |
24455280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 13962245 - 13962373
Alignment:
| Q |
206 |
tttttagcataatttaggagacattttagagtgtttctagcaagttataattcattttagtcaaatttatgtaaataatccaatggttgggcttgtgata |
305 |
Q |
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| T |
13962245 |
tttttagcatcatttatgtgttattttagagtctttttagcaagttctcaattgttttagtcgagtttatgcaaataattcaatggatgagcatgagaga |
13962344 |
T |
|
| Q |
306 |
gtaatttaaagcacaaggccttgaaccac |
334 |
Q |
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| ||| ||||||||||||||||||||| |
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| T |
13962345 |
atgattcgaagcacaaggccttgaaccac |
13962373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 43716684 - 43716728
Alignment:
| Q |
336 |
acaaatcacctaaaacaaacaactatgtggtcatgctacactttt |
380 |
Q |
| |
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|||||||||| |||| | |||||||||||||||||||| |||||| |
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| T |
43716684 |
acaaatcacccaaaagagacaactatgtggtcatgctatactttt |
43716728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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