View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_112 (Length: 339)
Name: NF1111_low_112
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 330
Target Start/End: Complemental strand, 39470611 - 39470312
Alignment:
| Q |
30 |
gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttgaaatctctatattcaatatctgtttga |
129 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39470611 |
gattgatgttgccaaagaattttccctccctgcgtttgtgttgttcacttccggcattgctttccttggtttgaa-tctctatattcaatatctgtttga |
39470513 |
T |
|
| Q |
130 |
acgagacagcatcgattcgactcagttgatgcaactcacagagctgtccattccgagttttgctaatccggttccttcaatctcgttgcccagttcagtg |
229 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
39470512 |
acgagacagcaccgattcgactcagttgatgcaactcacagagctgcccattccgagttttgctaatccgtttcctttaaactcgttgcccagttcagtg |
39470413 |
T |
|
| Q |
230 |
ctacgcaaggaatacaaatccgtcttcacgagtttcgccaaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatg |
329 |
Q |
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|||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470412 |
ctacacaaggaatacaaatccgtcttcatgagcttcgccaaaggcctcaagaatgccgatggcattattgtcaattcatttgaagagctagaatcctatg |
39470313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 30 - 330
Target Start/End: Complemental strand, 39458148 - 39457848
Alignment:
| Q |
30 |
gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttgaaatctctatattcaatatctgtttga |
129 |
Q |
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||||||||||| ||||||||||| ||||| | | || ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
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| T |
39458148 |
gattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaaatcttcatattcataatatgtttga |
39458049 |
T |
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| Q |
130 |
acgagacagcatcgattcgactcagttgatgcaactcacagagctgtccattccgagtttt-gctaatccggttccttcaatctcgttgcccagttcagt |
228 |
Q |
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|||||||| | | ||||| ||||||||| |||| | || ||| || |||| ||||| ||| ||||| | |||||||||| | | |||||||||||||| |
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| T |
39458048 |
acgagacaacgttgattccactcagttgctgcagcagactgagttggccat-ccgaggtttcgctaactcagttccttcaaacactttgcccagttcagt |
39457950 |
T |
|
| Q |
229 |
gctacgcaaggaatacaaatccgtcttcacgagtttcgccaaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctat |
328 |
Q |
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|||||||||||||| | ||| |||||| ||| | || ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
39457949 |
gctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctat |
39457850 |
T |
|
| Q |
329 |
gc |
330 |
Q |
| |
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|| |
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|
| T |
39457849 |
gc |
39457848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 330
Target Start/End: Complemental strand, 39464409 - 39464110
Alignment:
| Q |
30 |
gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttgaaatctctatattcaatatctgtttga |
129 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||||| |
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| T |
39464409 |
gattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttg-aatcttcatattcacactttgtttga |
39464311 |
T |
|
| Q |
130 |
acgagacagcatcgattcgactcagttgatgcaactcacagagctgtccattccgagttttgctaatccggttccttcaatctcgttgcccagttcagtg |
229 |
Q |
| |
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|||||||| | ||||||| |||||| || |||||| || || ||||| | |||||||| ||||| | |||||| ||| |||||||||||| |||| |
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| T |
39464310 |
acgagacaacgtcgattcaactcagctggagcaactgactgaattgtccctcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgcagta |
39464211 |
T |
|
| Q |
230 |
ctacgcaaggaatacaaatccgtcttcacgagtttcgccaaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatg |
329 |
Q |
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|||||||||||| | | || | |||| ||| | || |||||||||||||| |||||||| |||| || |||||||||||||||||||||||| ||| |
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| T |
39464210 |
atacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatg |
39464111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 39486786 - 39486917
Alignment:
| Q |
30 |
gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttgaaatctctatattcaatatctgtttga |
129 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| | | ||||||||||||||||||||||| ||||||||| | ||| || |||| ||||||||| |
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| T |
39486786 |
gattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttggtttg-atgctccatcttcacactctgtttga |
39486884 |
T |
|
| Q |
130 |
acgagacagcatcgattcgactcagttgatgca |
162 |
Q |
| |
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|||||||| ||||||||| ||||||||| |||| |
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| T |
39486885 |
acgagacaacatcgattcaactcagttgctgca |
39486917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 39451560 - 39451614
Alignment:
| Q |
270 |
aaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatc |
324 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
39451560 |
aaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatc |
39451614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 39472589 - 39472645
Alignment:
| Q |
269 |
aaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcc |
325 |
Q |
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|||||||||||||| ||||||||| |||| || |||||||||||||||||||||||| |
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| T |
39472589 |
aaaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcc |
39472645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 39460568 - 39460638
Alignment:
| Q |
30 |
gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtt |
100 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | |||| |||||||||||||||||||||| |||||||| |
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| T |
39460568 |
gattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggtt |
39460638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39454954 - 39455027
Alignment:
| Q |
30 |
gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttga |
103 |
Q |
| |
|
|||||||||||||||||| || ||| ||||| || | || |||||||||||| |||| |||||||||||||||| |
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| T |
39454954 |
gattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagtgtagctttccttggtttga |
39455027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39472351 - 39472424
Alignment:
| Q |
30 |
gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttga |
103 |
Q |
| |
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|||||||||||||||||| || || ||||| | |||| |||||||||||||||||||| |||||||| |||| |
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| T |
39472351 |
gattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga |
39472424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 103
Target Start/End: Complemental strand, 43312346 - 43312315
Alignment:
| Q |
72 |
cttcacttccggtgttgctttccttggtttga |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
43312346 |
cttcacttccggtgttgctttccttggtttga |
43312315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 39460809 - 39460867
Alignment:
| Q |
272 |
ggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgc |
330 |
Q |
| |
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||||||||||| || |||| ||||| || |||||||||||||||||||||||| |||| |
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| T |
39460809 |
ggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgc |
39460867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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