View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_115 (Length: 335)
Name: NF1111_low_115
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 142 - 323
Target Start/End: Original strand, 51587935 - 51588116
Alignment:
| Q |
142 |
ctgcattggaatatacctcagcaacaaggttccactttttgagttgtttaaatctcatcaaagtaccaacaacaagggctttaggaatagtttgattttt |
241 |
Q |
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| T |
51587935 |
ctgcattggaatatacctcagcaacaaggttccactttttgagttgtttaaatctcatcaaagtaccaacaacaagggctttaggaatagtttgattttt |
51588034 |
T |
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| Q |
242 |
catcttctccgaattgagcactgaaacagcagaaccagtctcatctattaacttcattagtctccaccaatttttctgttca |
323 |
Q |
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| T |
51588035 |
catcttctccgaattgagcactgaaacagcagaaccagtctcatctattaacttcataagtctccaccaatttttctgttca |
51588116 |
T |
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