View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_119 (Length: 332)
Name: NF1111_low_119
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_119 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 47126248 - 47126565
Alignment:
| Q |
8 |
acacgacacttacatgatgacaccaataataatttaaga---tgaaataattgaatgtacccacatatgtttggatcgtgtcggacaccaaac----ctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
47126248 |
acacgacacttacatgatgacaccaataataatttaagaaaatgaaataattgaatgtacccacatatgtttggatcgtgtcgaacaccaaacacacctt |
47126347 |
T |
|
| Q |
101 |
caatctaaagtgtcggtgatacatagtttattcgataccaaagctaagtctttggttagataaatagcaagaattcaaagagaatggtttcagatggata |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47126348 |
caatctaaagtgtcggtgatacatagtttattcgacaccaaagctaagtctttggttagataaatagcaaaaattcaaagagaatggtttcagatggata |
47126447 |
T |
|
| Q |
201 |
tgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtatatggcaatttcactggcccatttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47126448 |
tgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtataaggcaatttcactggcccatttct |
47126547 |
T |
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| Q |
301 |
gttcttcaaacttgggtc |
318 |
Q |
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|||||||||||||||||| |
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| T |
47126548 |
gttcttcaaacttgggtc |
47126565 |
T |
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