View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_12 (Length: 554)

Name: NF1111_low_12
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_12
NF1111_low_12
[»] chr6 (16 HSPs)
chr6 (30-544)||(370567-371091)
chr6 (77-299)||(1459578-1459800)
chr6 (81-299)||(1470960-1471178)
chr6 (426-541)||(1453622-1453737)
chr6 (426-541)||(1465314-1465429)
chr6 (81-203)||(7564884-7565006)
chr6 (144-201)||(1442234-1442291)
chr6 (295-329)||(176354-176388)
chr6 (187-268)||(1453908-1453989)
chr6 (187-268)||(1465600-1465681)
chr6 (501-542)||(7564538-7564579)
chr6 (507-542)||(176599-176634)
chr6 (503-542)||(1459316-1459355)
chr6 (295-329)||(1442105-1442139)
chr6 (142-202)||(9819957-9820017)
chr6 (142-202)||(9825637-9825697)
[»] chr7 (3 HSPs)
chr7 (81-211)||(3926855-3926985)
chr7 (512-543)||(3927335-3927366)
chr7 (295-328)||(3927079-3927112)
[»] chr4 (4 HSPs)
chr4 (81-214)||(55419578-55419711)
chr4 (460-541)||(55419967-55420048)
chr4 (295-327)||(55419802-55419834)
chr4 (296-338)||(22672115-22672157)
[»] chr3 (5 HSPs)
chr3 (296-338)||(2442060-2442102)
chr3 (299-338)||(989420-989459)
chr3 (296-334)||(4142126-4142164)
chr3 (296-338)||(4157932-4157974)
chr3 (297-338)||(1931142-1931183)
[»] chr2 (3 HSPs)
chr2 (296-329)||(6538855-6538888)
chr2 (296-328)||(7160752-7160784)
chr2 (296-328)||(7168688-7168720)
[»] chr1 (2 HSPs)
chr1 (141-202)||(25478730-25478791)
chr1 (141-202)||(25869303-25869364)
[»] chr5 (2 HSPs)
chr5 (296-335)||(23766853-23766892)
chr5 (296-335)||(23816701-23816740)


Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 30 - 544
Target Start/End: Complemental strand, 371091 - 370567
Alignment:
Q  30 ccatgcttaccttctcaactactcatgggtgaactcgaagtttctctaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaaca 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  371091 ccatgcttaccttctcaactactcatgggtgaactcgaagtttctccaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaaca 370992  T
Q  130 acaattcatgggccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattcca 229  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370991 acaattcatgggtcattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattcca 370892  T
Q  230 cttggaggtttctagggattgctaatgcatccttgctcagactaaaacttttacgggcatttgggt----------tatggaaataaagattcttggact 319  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||          ||||||||||||||||||||||||    
T  370891 cttggaggtttctagggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggact 370792  T
Q  320 aaattgttcaatatttctttcgcgacggaatttggtcatgctgattccatcaatcaattttatatttttgaagaggatgaccaattgattttggacttct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  370791 aaattgttcaatatttctttcgcgacggaatttggtcatgctgattccatcaatcaattttatatttttgaagaggatgaccaattgattttgaacttct 370692  T
Q  420 ttgatcaggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttga 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  370691 ttgatcaggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttcaacttcattcatctctaatgtctacgttga 370592  T
Q  520 gagtctcatatcaccttgacctatg 544  Q
    |||||||||||||||||||||||||    
T  370591 gagtctcatatcaccttgacctatg 370567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 77 - 299
Target Start/End: Complemental strand, 1459800 - 1459578
Alignment:
Q  77 aggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattat 176  Q
    |||||||||||||||||| |||||||||||||||||||| |||  | ||||  ||  |||| ||| |||||||||||||||||||| ||| |||| ||||    
T  1459800 aggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttat 1459701  T
Q  177 caagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaa 276  Q
    |||||||||| ||||||| |||||||| ||||||||||||||| | | ||   ||||| ||||| |||||||| || |||| |||||||||| || |||     
T  1459700 caagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaat 1459601  T
Q  277 cttttacgggcatttgggttatg 299  Q
    |||||  ||  ||||||||||||    
T  1459600 cttttttggatatttgggttatg 1459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 81 - 299
Target Start/End: Complemental strand, 1471178 - 1470960
Alignment:
Q  81 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 180  Q
    ||||||||| |||| ||||||||||||||| |||||||| || ||||  ||  |||| ||| ||||||||||||| |||||| ||| |||| ||||||||    
T  1471178 aaatttgtatgtggtaccattaattgggtcgtactagatcaagagaatgactcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaag 1471079  T
Q  181 agatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaacttt 280  Q
    ||||||  ||||||||||||| | ||||||||||||||| | | ||   ||||| |||||||||||||| || ||||||||||||||| || ||| ||||    
T  1471078 agattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttt 1470979  T
Q  281 tacgggcatttgggttatg 299  Q
    |  ||  ||||||||||||    
T  1470978 tttggatatttgggttatg 1470960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 426 - 541
Target Start/End: Complemental strand, 1453737 - 1453622
Alignment:
Q  426 aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtct 525  Q
    |||||||||||||||||||||||||||  ||   ||||| |||||| |||||| |||||| |||||     || ||||||||||||||||||||||||||    
T  1453737 aggtatatgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct 1453638  T
Q  526 catatcaccttgacct 541  Q
    || |||||||| ||||    
T  1453637 cacatcaccttaacct 1453622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 426 - 541
Target Start/End: Complemental strand, 1465429 - 1465314
Alignment:
Q  426 aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtct 525  Q
    |||||||||||||||||||||||||||  ||   ||||| |||||| |||||| |||||| |||||     || ||||||||||||||||||||||||||    
T  1465429 aggtatatgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct 1465330  T
Q  526 catatcaccttgacct 541  Q
    || |||||||| ||||    
T  1465329 cacatcaccttaacct 1465314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 7565006 - 7564884
Alignment:
Q  81 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 180  Q
    ||||||||||||||  ||||| |||||||||||  |||| || | ||  ||  |||||||| ||||||||| ||||||||||  || |||| ||||||||    
T  7565006 aaatttgtaagtggcgccattcattgggtcataaaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaag 7564907  T
Q  181 agatttcgcagcctgattatggt 203  Q
    |||||| |||||| |||||||||    
T  7564906 agattttgcagccagattatggt 7564884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 1442291 - 1442234
Alignment:
Q  144 attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatg 201  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |  |||||||||||    
T  1442291 attctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatg 1442234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 176354 - 176388
Alignment:
Q  295 ttatggaaataaagattcttggactaaattgttca 329  Q
    |||||||||||||||||||||||||||||||||||    
T  176354 ttatggaaataaagattcttggactaaattgttca 176388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 1453989 - 1453908
Alignment:
Q  187 cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca 268  Q
    ||||||| |||| |||||||||||| ||||||| ||| ||   |||||  || ||||||||||||| |||||||||||||||    
T  1453989 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca 1453908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 1465681 - 1465600
Alignment:
Q  187 cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca 268  Q
    ||||||| |||| |||||||||||| ||||||| ||| ||   |||||  || ||||||||||||| |||||||||||||||    
T  1465681 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca 1465600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 501 - 542
Target Start/End: Complemental strand, 7564579 - 7564538
Alignment:
Q  501 cctctaatgtctacgttgagagtctcatatcaccttgaccta 542  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  7564579 cctctaatgtctatgttgagagtctcgtatcaccttgaccta 7564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 542
Target Start/End: Original strand, 176599 - 176634
Alignment:
Q  507 atgtctacgttgagagtctcatatcaccttgaccta 542  Q
    ||||||| ||||||||||||||||||||||||||||    
T  176599 atgtctatgttgagagtctcatatcaccttgaccta 176634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 542
Target Start/End: Complemental strand, 1459355 - 1459316
Alignment:
Q  503 tctaatgtctacgttgagagtctcatatcaccttgaccta 542  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  1459355 tctaatgtctacgcagagagtctcatatcaccttgaccta 1459316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 1442139 - 1442105
Alignment:
Q  295 ttatggaaataaagattcttggactaaattgttca 329  Q
    |||||||| ||||||||||||||||||||||||||    
T  1442139 ttatggaattaaagattcttggactaaattgttca 1442105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 9820017 - 9819957
Alignment:
Q  142 ccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 202  Q
    ||||| ||||||||||||| |  | |||||  ||||||||||||| |||||||||||||||    
T  9820017 ccattgtttctcttgatttggggagagagtcctatcaagagattttgcagcctgattatgg 9819957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 9825697 - 9825637
Alignment:
Q  142 ccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 202  Q
    ||||| ||||||||||||| |  | |||||  ||||||||||||| |||||||||||||||    
T  9825697 ccattgtttctcttgatttggggacagagtcctatcaagagattttgcagcctgattatgg 9825637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 3926855 - 3926985
Alignment:
Q  81 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 180  Q
    |||||||||||||| || |||||||||| ||||  | || |||||||| |  ||||||||| |||||||||||||||||||| ||| ||||  |||||||    
T  3926855 aaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaactatgattcatgggtcattctttctcttgatttaggaaacgagtcctatcaag 3926954  T
Q  181 agatttcgcagcctgattatggtctagatga 211  Q
    ||||||| | ||| |||| |||||| |||||    
T  3926955 agatttcacggcccgattttggtcttgatga 3926985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 543
Target Start/End: Original strand, 3927335 - 3927366
Alignment:
Q  512 tacgttgagagtctcatatcaccttgacctat 543  Q
    ||||||||||||||||||||||||||||||||    
T  3927335 tacgttgagagtctcatatcaccttgacctat 3927366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 3927079 - 3927112
Alignment:
Q  295 ttatggaaataaagattcttggactaaattgttc 328  Q
    ||||||||||||| ||||||||||||||||||||    
T  3927079 ttatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 55419578 - 55419711
Alignment:
Q  81 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 180  Q
    |||||||||||||| ||||||||||||| ||||  |||| || ||||  || ||  ||||| |||||||||||| ||||||| ||| |||| ||||||||    
T  55419578 aaatttgtaagtggcaccattaattgggccatagaagatcaagagaaatactatctatgggtcattctttctctggatttaggaaatgagtcttatcaag 55419677  T
Q  181 agatttcgcagcctgattatggtctagatgaacc 214  Q
     |||| |||| || || |||||||||||||||||    
T  55419678 tgattccgcatcccgagtatggtctagatgaacc 55419711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 541
Target Start/End: Original strand, 55419967 - 55420048
Alignment:
Q  460 aaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtctcatatcaccttgacct 541  Q
    ||||| |||| |||||||| |||||| ||| | ||| |||| ||||| ||||||| |||| ||||| |||||||||||||||    
T  55419967 aaagattcctgacattcaaggcctcccttcaaattcgttcaactctattgtctactttgaaagtctgatatcaccttgacct 55420048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 55419802 - 55419834
Alignment:
Q  295 ttatggaaataaagattcttggactaaattgtt 327  Q
    |||||||||||||||||||||||||||||||||    
T  55419802 ttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 22672157 - 22672115
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttcaatatttctt 338  Q
    ||||||||||| || ||||||||||||||||||| ||||||||    
T  22672157 tatggaaataaggaatcttggactaaattgttcactatttctt 22672115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 2442060 - 2442102
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttcaatatttctt 338  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  2442060 tatggaaataaagattcttggactaaattgttcactctttctt 2442102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 989420 - 989459
Alignment:
Q  299 ggaaataaagattcttggactaaattgttcaatatttctt 338  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  989420 ggaaataaagagtcttggactaaattgttcactatttctt 989459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 4142164 - 4142126
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttcaatatt 334  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  4142164 tatggaaataaagagtcttggactaaattgttcactatt 4142126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 4157974 - 4157932
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttcaatatttctt 338  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||    
T  4157974 tatggaaataaagagtcttggactaaattgttcactatctctt 4157932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 1931183 - 1931142
Alignment:
Q  297 atggaaataaagattcttggactaaattgttcaatatttctt 338  Q
    ||||||||||||| || |||||||||||||||| ||||||||    
T  1931183 atggaaataaagactcctggactaaattgttcactatttctt 1931142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 6538855 - 6538888
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttca 329  Q
    ||||||||||||||||||||||||||||||||||    
T  6538855 tatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 7160784 - 7160752
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttc 328  Q
    ||||||||||| |||||||||||||||||||||    
T  7160784 tatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 7168720 - 7168688
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttc 328  Q
    ||||||||||| |||||||||||||||||||||    
T  7168720 tatggaaataacgattcttggactaaattgttc 7168688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 25478730 - 25478791
Alignment:
Q  141 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 202  Q
    |||||| |||||||| |||| |  ||||||| ||||||||||||||| ||||||||||||||    
T  25478730 gccattgtttctcttcatttggggaaagagtcttatcaagagatttcacagcctgattatgg 25478791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 25869364 - 25869303
Alignment:
Q  141 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 202  Q
    |||||| |||||||| |||| | ||||||||  |||||||| ||||| ||||||||||||||    
T  25869364 gccattgtttctcttcatttgggaaaagagtcctatcaagacatttcacagcctgattatgg 25869303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 23766892 - 23766853
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttcaatattt 335  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  23766892 tatggaaataaagagtcttggactaaattgttcactattt 23766853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 23816740 - 23816701
Alignment:
Q  296 tatggaaataaagattcttggactaaattgttcaatattt 335  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  23816740 tatggaaataaagagtcttggactaaattgttcactattt 23816701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University