View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_121 (Length: 332)
Name: NF1111_low_121
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_121 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 31527113 - 31526961
Alignment:
| Q |
98 |
aaaagcatgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527113 |
aaaagcatgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatg |
31527014 |
T |
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| Q |
198 |
aagaacttcacaatgatgataatagtgaaaaacacataaagcattgttcatct |
250 |
Q |
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| T |
31527013 |
aagaacttcacaatgatgataatagtgaaaaacacataaagcattgttcatct |
31526961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 5291106 - 5290991
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
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||||||||| ||||||| |||||| || ||||||||||| ||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||| |
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| T |
5291106 |
catgggagaacctgttagaatgatccctgaagctctatccattctgattcaagttaaggtttcgttcgatcgtcttactaattttttgcttgatgaagaa |
5291007 |
T |
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| Q |
203 |
cttcacaatgatgata |
218 |
Q |
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|| |||||||||||| |
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| T |
5291006 |
ctaaacaatgatgata |
5290991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 5305989 - 5306104
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
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| T |
5305989 |
catggcagaacctgttaggatgatccctgaggctctatccattctgattcaagttaaggtttcgttcgatcgtctcaataaccttctgcttgatgaagaa |
5306088 |
T |
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| Q |
203 |
cttcacaatgatgata |
218 |
Q |
| |
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|| |||||||||||| |
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| T |
5306089 |
ctaaacaatgatgata |
5306104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 14950425 - 14950310
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
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||||||||| ||| ||| |||| | || || |||||||| | | ||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||| |
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| T |
14950425 |
catgggagagcctattataatgttccctgaggctctatccactatgattcaagttaaggtttcgtttgatcgtcttaaaagctttttgcttgctgaagaa |
14950326 |
T |
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| Q |
203 |
cttcacaatgatgata |
218 |
Q |
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|| |||||||||||| |
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| T |
14950325 |
ctaaacaatgatgata |
14950310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 15125241 - 15125354
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
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||||||||| ||||||| || || ||||| |||||||| | | ||||||||| ||||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
15125241 |
catgggagaacctgttagaactatcccagaggctctatccaatatgattcaagctaaggtttcattcgatcgtcttaataacttttttcttgatgaagac |
15125340 |
T |
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| Q |
203 |
cttcacaatgatga |
216 |
Q |
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||| ||||| |||| |
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| T |
15125341 |
cttaacaataatga |
15125354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 11832543 - 11832638
Alignment:
| Q |
122 |
atgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaacttcacaatgatgat |
217 |
Q |
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||||| ||||| ||||| || ||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
11832543 |
atgatcccagaggctctttccattatgattcaagttaaagttttgttcgatcgtcttaataactttttgcttgatgaagaaatatacaatgatgat |
11832638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 5283611 - 5283497
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
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||||||||| || ||||| |||| ||||| ||||| || ||| ||||||| || || ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5283611 |
catgggagaaccatttaaattgatcccagaggctctttccattatgattcaggtgaaagtttcgtttgatcgtcttaataactttttgcttgatgaagag |
5283512 |
T |
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| Q |
203 |
cttcacaatgatgat |
217 |
Q |
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| T |
5283511 |
ataaacaatgatgat |
5283497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 5313202 - 5313300
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaaga |
201 |
Q |
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|||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||||||||||||||| || | ||| ||||||||||||| |
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| T |
5313202 |
catgggagatcctgttcttatgatcccagaggctctatctataacgattcaagttaaggtttcctttgatcgtctcaacacatttatgcttgatgaaga |
5313300 |
T |
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