View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_129 (Length: 325)
Name: NF1111_low_129
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_129 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 24168574 - 24168772
Alignment:
| Q |
44 |
caaccgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaat |
143 |
Q |
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| T |
24168574 |
caaccgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggtgtttccatcaaagacattaccgttaactccgaaaat |
24168673 |
T |
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| Q |
144 |
aatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcatattcttc |
242 |
Q |
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| T |
24168674 |
aacgtttggttccgtctctttacacccactgttggcggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcattttcttc |
24168772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 24179010 - 24179208
Alignment:
| Q |
44 |
caaccgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaat |
143 |
Q |
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| T |
24179010 |
caaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactcctgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaat |
24179109 |
T |
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| Q |
144 |
aatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcatattcttc |
242 |
Q |
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| T |
24179110 |
aacgtttggtttcgtctctttacccccactgttgccggagaagtcaccggagatggtggtgccaccaaagcaacctcccttcctgtcgtcattttcttc |
24179208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 24188820 - 24189014
Alignment:
| Q |
48 |
cgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaataatg |
147 |
Q |
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| T |
24188820 |
cgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccactaaagacgtcaccgttaactccgaaaacaacc |
24188919 |
T |
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| Q |
148 |
tttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcatattcttc |
242 |
Q |
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| T |
24188920 |
tttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccaccaaaactacctcccttcccgtcgtcattttcttc |
24189014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 24151735 - 24151863
Alignment:
| Q |
44 |
caaccgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaat |
143 |
Q |
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|||||||||||||||||||||||||| | ||| |||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |
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| T |
24151735 |
caaccgccgtctctttaacttcttcagtctcaatgcctcacctaactccactcccgttaacggcgtttccaccaaagacattaccgttaacaccgaaaat |
24151834 |
T |
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| Q |
144 |
aatgtttggttccgtctctttacacccac |
172 |
Q |
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| T |
24151835 |
aacgtttggtttcgtctcttcactcccac |
24151863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 24112484 - 24112584
Alignment:
| Q |
72 |
cgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaataatgtttggttccgtctctttacaccca |
171 |
Q |
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|||||||| || ||||| |||| || ||||||||||||||||||| |||| ||||||||||| | ||| |||| ||||||||||||||||| ||||||| |
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| T |
24112484 |
cgcaaatcttcccctaacgccatccctgttaacggcgtttccaccaaagacgttatcgttaacgcagaagataacgtttggttccgtctcttcacaccca |
24112583 |
T |
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| Q |
172 |
c |
172 |
Q |
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| T |
24112584 |
c |
24112584 |
T |
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