View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_133 (Length: 323)
Name: NF1111_low_133
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_133 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 22941968 - 22942201
Alignment:
| Q |
88 |
aagttttctaatgtaaaattgcttttttggttgattaatatgtgcccttagaacacaagttaacatgacnnnnnnn--------gacaaaaattgtctac |
179 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22941968 |
aagttttttaatgtaaaattgttcttttggttg-ttaacatgtgtccttagaacacaagttaacatgacaaaaaaaaaaaaaaagacaaaaattgtctac |
22942066 |
T |
|
| Q |
180 |
ttttaatcgctgatttgcctaagccagtgattttaggtgcttaaaattccatgtaaagggatctaagatttcatttaatttaattattttatatatgatc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22942067 |
ttttaatcgctgatttgcctaagccagtgattttaggtgcttaaaattccatgtaaagggatctaagatttcatttcatttaattattttatatatgatc |
22942166 |
T |
|
| Q |
280 |
aaatatgttaactcattaccgaagaaaagaataat |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |
|
|
| T |
22942167 |
aaatatgttaactcattattgaagaaaaggataat |
22942201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 3787528 - 3787596
Alignment:
| Q |
90 |
gttttctaatgtaaaattgcttttttgg--ttgattaatatgtgcccttagaacacaagttaacatgac |
156 |
Q |
| |
|
||||||||||||||||||||| |||| | || ||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
3787528 |
gttttctaatgtaaaattgctctttttgaattcattaacatgtgcccttaggacataagttaacatgac |
3787596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University