View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_134 (Length: 323)
Name: NF1111_low_134
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_134 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 92 - 302
Target Start/End: Original strand, 28863274 - 28863484
Alignment:
| Q |
92 |
ggttgctcctgttgattctggattttggtggattatattacttcgtgcttacacaaagtctacaggagacacttccttggctgatagcaatgcttgtcaa |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28863274 |
ggttgctcctgttgattctggattttggtggattatattacttcgtgcttacacaaagtctacaggagacacttccttggctgatagcgatgcttgtcaa |
28863373 |
T |
|
| Q |
192 |
gagggtatgcgcctgattctgaatttatgccttccagaaggatttgacacttttccaactctgctatgtactgatggatgctgtatgattgatcgcagaa |
291 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28863374 |
gagggtatgcgcctgattctgaatttatgcctttcagaaggatttgacacttttccaactctgctatgtactgatggatgctgtatgattgatcgcagaa |
28863473 |
T |
|
| Q |
292 |
tggtaagtact |
302 |
Q |
| |
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||||||||||| |
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| T |
28863474 |
tggtaagtact |
28863484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 295
Target Start/End: Complemental strand, 55112585 - 55112382
Alignment:
| Q |
92 |
ggttgctcctgttgattctggattttggtggattatattacttcgtgcttacacaaagtctacaggagacacttccttggctga-tagcaatgcttgtca |
190 |
Q |
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| T |
55112585 |
ggttgctcctgttgattctggattttggtggatcatattgcttcgtgcatacacaaaatctacaggagactcttctttagctgaccagc-ctgaatgtca |
55112487 |
T |
|
| Q |
191 |
agagggtatgcgcctgattctgaatttatgccttccagaaggatttgacacttttccaactctgctatgtactgatggatgctgtatgattgatcgcaga |
290 |
Q |
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| T |
55112486 |
aaagggtatgcgtttgattctgagtttatgcttgtcagaggggtttgatacatttccgactttactatgtgctgatgggtgctgtatgattgatcgtaga |
55112387 |
T |
|
| Q |
291 |
atggt |
295 |
Q |
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||||| |
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| T |
55112386 |
atggt |
55112382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 43221916 - 43221852
Alignment:
| Q |
93 |
gttgctcctgttgattctggattttggtggattatattacttcgtgcttacacaaagtctacagg |
157 |
Q |
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|||||||||||||| ||||||||||||||||| || || ||||||||||||||||| |||||||| |
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| T |
43221916 |
gttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacagg |
43221852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 43221775 - 43221711
Alignment:
| Q |
234 |
tttgacacttttccaactctgctatgtactgatggatgctgtatgattgatcgcagaatggtaag |
298 |
Q |
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| T |
43221775 |
tttgacacattcccaactctcctatgtgctgatggatgctgcatgattgatcgaagaatggtaag |
43221711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 43231193 - 43231129
Alignment:
| Q |
234 |
tttgacacttttccaactctgctatgtactgatggatgctgtatgattgatcgcagaatggtaag |
298 |
Q |
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|||||||| |||||||||||||| ||| ||||||||||||| ||||||||| | ||||||||||| |
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| T |
43231193 |
tttgacacatttccaactctgctttgtgctgatggatgctgcatgattgatagaagaatggtaag |
43231129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 43231334 - 43231270
Alignment:
| Q |
93 |
gttgctcctgttgattctggattttggtggattatattacttcgtgcttacacaaagtctacagg |
157 |
Q |
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|||||||||||||| |||||||| |||||||| || || ||||||||||||||||| |||||||| |
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| T |
43231334 |
gttgctcctgttgactctggattctggtggatcattttgcttcgtgcttacacaaaatctacagg |
43231270 |
T |
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