View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_135 (Length: 323)
Name: NF1111_low_135
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_135 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14776348 - 14776105
Alignment:
| Q |
1 |
caaagaaggacttaggccaagtgctaccatgctttggagaagattatacgcatctggcaatcgatgcaccctaagaaatgcactgaggagagaattgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14776348 |
caaagaaggacttaggccaagtgctaccatgctttggagaagattatacgcatctggcaatcgatgcaccctaagaaatgcactgaggagagaattgcaa |
14776249 |
T |
|
| Q |
101 |
gttggtacatttggaagcaaacctgcactgagcattgccccgtaccattcccaagccttctcaacattaccagcctttccccataggtctaccagaagac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14776248 |
gttggtacatttggaagcaaacctgcactgagcattgccccgtaccattcccaagccttctcaacattaccagcctttccccataggtctaccagaagac |
14776149 |
T |
|
| Q |
201 |
cataaacaggttcgtctggaacccaattcctctgcttcatctca |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14776148 |
cataaacaggttcgtctggaacccaattcctctgcttcatctca |
14776105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University