View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_137 (Length: 320)

Name: NF1111_low_137
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_137
NF1111_low_137
[»] chr1 (2 HSPs)
chr1 (28-310)||(1462431-1462713)
chr1 (28-197)||(1496927-1497096)
[»] chr8 (1 HSPs)
chr8 (28-195)||(26790295-26790462)
[»] chr3 (1 HSPs)
chr3 (32-195)||(50276096-50276259)
[»] chr2 (3 HSPs)
chr2 (36-174)||(15869060-15869198)
chr2 (39-175)||(21980523-21980659)
chr2 (39-175)||(45197415-45197551)
[»] chr7 (1 HSPs)
chr7 (28-122)||(48664531-48664625)
[»] chr4 (2 HSPs)
chr4 (36-174)||(53075459-53075597)
chr4 (28-175)||(48436915-48437062)
[»] chr5 (1 HSPs)
chr5 (103-174)||(15161884-15161955)
[»] chr6 (1 HSPs)
chr6 (55-124)||(3156280-3156349)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 28 - 310
Target Start/End: Complemental strand, 1462713 - 1462431
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1462713 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcgtcatttacaccatctccagtcattccacaaat 1462614  T
Q  128 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcgatttcatacaaagagaaaaggtgttaaacactttttaattggacatcatta 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1462613 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaaggggttaaacactttttaattggacatcatta 1462514  T
Q  228 agaggtgtccaaagtgtgtctgaggaatgtccgtgtccaaaacaacttaaatatgataaatatataaatgattgtcgcctttg 310  Q
    | |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1462513 aaaggtgtccaaagtgtgtctgagaagtgtccgtgtccaaaacaacttaaatatgataaatatataaatgattgtcgcctttg 1462431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 1496927 - 1497096
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaat 127  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||| || ||||| |||||||||||||| ||||||||||| ||    
T  1496927 cacttctagcagcatctgtagcatcagcaactgcaattccgatatcggctttctttaacgcaggagcatcgtttacaccatctcctgtcattccacatat 1497026  T
Q  128 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcgatttcatacaaagagaaaagg 197  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||| ||| | || ||| ||||||| ||||||    
T  1497027 atgcttcttctcttgcagcctcttgacgatttcgtatttgtgctctaccatatcaaacaaagataaaagg 1497096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 26790462 - 26790295
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaat 127  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||| ||    
T  26790462 cacttctagcagcatctgtggcatcagcaaccgcaattccaatgtctgctttctttagtgcaggtgcatcgtttacaccatctccagtcattccacatat 26790363  T
Q  128 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcgatttcatacaaagagaaaa 195  Q
    ||| ||||| ||||| |||||||| ||||||||||| ||||||||| | || | ||||| ||||||||    
T  26790362 atgtttcctttcttggagcctcttaacaatttcatacttgtgttctaccatattatacagagagaaaa 26790295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 50276259 - 50276096
Alignment:
Q  32 tctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  || || || || || |||||||| || ||||||||||| |||||     
T  50276259 tctagcagcatctgtagcatcagcaacagcaattccaatatctgctctctttaaggcaggagcgtcgttgacaccatcacctgtcattccacatatatgt 50276160  T
Q  132 ttcctctcttgaagcctcttgacaatttcatatttgtgttctgcgatttcatacaaagagaaaa 195  Q
    ||||||||||| ||| |||| || |||||||||||||||||| | || ||||| ||||||||||    
T  50276159 ttcctctcttgcagcttctttacgatttcatatttgtgttctaccatgtcatagaaagagaaaa 50276096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 15869198 - 15869060
Alignment:
Q  36 gcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcc 135  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| || |  || || |||||||| |||||||||||||||||||||  ||| |||||||    
T  15869198 gcagcatcagtagcatcagcaacagcaattccaatatcggcttttttcaatgcaggagcatcattcacaccatctccagtcattccaacaatgtgcttcc 15869099  T
Q  136 tctcttgaagcctcttgacaatttcatatttgtgttctg 174  Q
    ||||||| |   |||| ||||||||||| || |||||||    
T  15869098 tctcttgtaatttcttcacaatttcatacttatgttctg 15869060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 21980523 - 21980659
Alignment:
Q  39 gcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctct 138  Q
    ||||| || ||||||||||||||||| ||||| ||||| ||||| |  || || ||||| |||||||||||||| ||||| ||||| || |||||||| |    
T  21980523 gcatcagttgcatcagcaacagcaataccaatgtctgccttcttcaatgctggtgcatcgtttacaccatctccggtcataccacatatgtgcttcctat 21980622  T
Q  139 cttgaagcctcttgacaatttcatatttgtgttctgc 175  Q
    | || | |||||| ||||| || || ||||| |||||    
T  21980623 cctgcaacctcttcacaatctcgtacttgtgctctgc 21980659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 45197415 - 45197551
Alignment:
Q  39 gcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctct 138  Q
    ||||| || |||||||| || |||||||||||||||||| | || |  || || |||||||| || |||||||| ||||| |||   || || ||||| |    
T  45197415 gcatcagttgcatcagccactgcaattccaatatctgctcttttcaatgcaggagcatcattcacgccatctcctgtcatcccaactatgtgtttcctat 45197514  T
Q  139 cttgaagcctcttgacaatttcatatttgtgttctgc 175  Q
    | || || ||||| ||||| |||||||| ||||||||    
T  45197515 cctggagtctctttacaatctcatatttatgttctgc 45197551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 48664625 - 48664531
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattcca 122  Q
    ||||||| || ||||||||||||||||  ||||| |||||||| ||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  48664625 cacttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattcca 48664531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 53075459 - 53075597
Alignment:
Q  36 gcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcc 135  Q
    |||||||||||||||||||||||||| ||||||||||| ||  | || |  || || ||||| || || |||||||| ||||| |||||||| |||||||    
T  53075459 gcagcatctgtagcatcagcaacagcgattccaatatcagcccttttcaaagctggagcatcgttgaccccatctccggtcatcccacaaatgtgcttcc 53075558  T
Q  136 tctcttgaagcctcttgacaatttcatatttgtgttctg 174  Q
    | ||||| | | || | ||||||||||||||||| ||||    
T  53075559 tttcttgcaacttccttacaatttcatatttgtgctctg 53075597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 48436915 - 48437062
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaat 127  Q
    ||||||| |||||||| || |||||  |||| ||||| || || ||||| ||||| || || || |||||||| |||||||| |||||||| |||  |||    
T  48436915 cacttcttgcagcatcagttgcatcgtcaactgcaataccgatgtctgccttcttcagtgcaggtgcatcattcacaccatcaccagtcataccaacaat 48437014  T
Q  128 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgc 175  Q
     || ||  | || || |||||||| ||||| || ||||||||||||||    
T  48437015 gtgttttttgtcctgcagcctcttcacaatctcgtatttgtgttctgc 48437062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 15161884 - 15161955
Alignment:
Q  103 caccatctccagtcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctg 174  Q
    ||||||||||||||||||||  ||| |||||||||||||| |   |||| ||||||||||| || |||||||    
T  15161884 caccatctccagtcattccaacaatgtgcttcctctcttgtaatttcttcacaatttcatacttatgttctg 15161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 3156349 - 3156280
Alignment:
Q  55 caacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccaca 124  Q
    ||||||| |||||||||||||||||||| || || || |||||||| || || || || |||||||||||    
T  3156349 caacagctattccaatatctgctttcttaagagcaggagcatcattaacgccgtcaccggtcattccaca 3156280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University