View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_14 (Length: 532)
Name: NF1111_low_14
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 34578273 - 34578797
Alignment:
| Q |
1 |
gccttacctcaaaatattaacattttttgctgacatgccagtttcaggaaacatggccttccttctatttacatcttcgtgaaatgacttgcctgcactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34578273 |
gccttacctcaaaatattaacattttttgctgacatgccagtttcaggaaacatggccttccttctatttacatcttcgtgaaatgacttgcctgcactt |
34578372 |
T |
|
| Q |
101 |
ggtgtaacatctaaaacaatgccctccctggtcatgatcggaattcggaagtaacagtcacattcattacttgggaagtaacaacctaacttccacaaag |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34578373 |
ggtgtaacatctaaaacaattccctccctggtcatgatcggaattcggaagtaacagtcacattcattacttgggaagtaacaacctaacttccacaaag |
34578472 |
T |
|
| Q |
201 |
atagcatctttgcagttgcaaaaatagtctttataaaataagaaacttctcgtataacagaaatccatgagcatatatattacctggtattacaactttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34578473 |
atagcatctttgcagttgcaaaaatagtctttataaaataagaaacttctcgtataacagaaatccataagcatatatattacctggtattacaactttt |
34578572 |
T |
|
| Q |
301 |
aagatcatcttttctgccaagcaacgctggtgcatccttcgttactttgctagaacctgggagtgaactgcttaccattttgcttccaaattttgtctca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34578573 |
aagatcatcttttctgccaagcaacgctggtgcatccttcgttactttgctagaacctgggagtgaactgcttaccattttgcttccaaattttgtctca |
34578672 |
T |
|
| Q |
401 |
tttgatttgatgctgttcctgttgtggaatatatattatgtataacattctacaattaaaagcccatcaaatacatttgttgaggtaagcataacatacc |
500 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34578673 |
tttgatttgatgttgttcctgttgtggaatatatattatgtataacattctacaattaaaagcccatcaaatacatttgttgaggtaagcataacatacc |
34578772 |
T |
|
| Q |
501 |
tttcttgggttatggatctgtggtg |
525 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
34578773 |
tttcttgggttatggatctctggtg |
34578797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University