View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_141 (Length: 318)
Name: NF1111_low_141
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_141 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 14692044 - 14691956
Alignment:
| Q |
10 |
caacaattaggagtataaaacagaagactgttctattgtattctttctaggtaatatccaaagtatataaaactataaattatttcagg |
98 |
Q |
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| T |
14692044 |
caacaattaggagtataaaacagaagactgttctattgtattctttctaggtaatatccaaagtatataaaactataaattatttcagg |
14691956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 265
Target Start/End: Complemental strand, 14691776 - 14691660
Alignment:
| Q |
150 |
aacactttctcagaatagctccaaaacgtatttcttcgctaagctt-attgctgaacaagagaataatcactaacaccctctcttctctaattaaacttt |
248 |
Q |
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| T |
14691776 |
aacactttctcataaaagctccaaaatgtatttcttcgctatgctttattgctgaactagagaataatcactaacaccctctcttctctaattaaccttt |
14691677 |
T |
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| Q |
249 |
aaataaccattctcata |
265 |
Q |
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| T |
14691676 |
aaataaccattatcata |
14691660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 14684419 - 14684303
Alignment:
| Q |
142 |
tatataccaacactttctcagaatagctccaaaacgta---tttcttcgctaagcttattgctgaacaagagaataatcactaacaccctctcttctcta |
238 |
Q |
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| T |
14684419 |
tatatatcaacacttcctcagaaaagctccaaaacatacaatttcttccctaagcttactgctgaaaaagagaataatcactaacaccctctcttctctc |
14684320 |
T |
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| Q |
239 |
attaaactttaaataac |
255 |
Q |
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| T |
14684319 |
attaacctttaaataac |
14684303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 14684840 - 14684757
Alignment:
| Q |
10 |
caacaattaggagtataaaacagaagactgttctattgtattctttctaggtaatatccaaagtatataaaactataaattatt |
93 |
Q |
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| T |
14684840 |
caacaatgtggagtataaaacagaagaatgttctattgtatactttgtaggtaatatccaaagtatataaaactataaattatt |
14684757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 2438785 - 2438738
Alignment:
| Q |
197 |
ttgctgaacaagagaataatcactaacaccctctcttctctaattaaact |
246 |
Q |
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| T |
2438785 |
ttgctgaacaatagaataatcact--caccctctcttatctaattaaact |
2438738 |
T |
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