View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_150 (Length: 313)
Name: NF1111_low_150
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_150 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 24752693 - 24752455
Alignment:
| Q |
1 |
ttaatgccaaataaattaaaaacaataaaaagaagtagcaaagaaactataattacttgaagtgttaaagcactagtgtgctttgtgactaaaaaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24752693 |
ttaatgccaaataaattaaaaacaataaaaagaagtggcaaagaaactataattacttgaagtgttaaagcactagtgtgctttgtgactaaaaaattgg |
24752594 |
T |
|
| Q |
101 |
tcaagttgacaaaatatgccagtgtggagttgaaaataagtaaccacacaatagttgaatcttctctagcaagttgaatggtaattccaagcacatcttc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24752593 |
tcaagttgacaaaatatgctagtgtggagttgaaaataagtaaccacacaatagttgaatcttctctagcaagttgaatggtaattccaagcacatcttc |
24752494 |
T |
|
| Q |
201 |
ctccattataattgaagcaggaagtaggattgcaacagc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24752493 |
ctccattataattgaagcaggaagtaggaatgcaacagc |
24752455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 35018437 - 35018385
Alignment:
| Q |
82 |
tttgtgactaaaaaattggtcaagttgacaaaatatgccagtgtggagttgaa |
134 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| |||| ||| ||||| |
|
|
| T |
35018437 |
tttgtgaccaaaaaattggtcagattgacaaaatatgcaagtgcggaattgaa |
35018385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University