View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_164 (Length: 299)
Name: NF1111_low_164
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_164 |
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| [»] scaffold0521 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 18202252 - 18202106
Alignment:
| Q |
76 |
gagatgaacctatgagaagatcctcgttgccggagttagggcctcgttgctggaggagacaaagtagcggctgatacaggaagtgttcattaaaagttca |
175 |
Q |
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|||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
18202252 |
gagacgaacctatgagaatatcctggttgccggagttagggcctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttca |
18202153 |
T |
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| Q |
176 |
gatccgtgatggaggagacgtcggaggagtaaagcggtggagatcga |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18202152 |
gatccgtgatggaggagacgtcggaggagtaaagcggtggagatcga |
18202106 |
T |
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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 35345382 - 35345277
Alignment:
| Q |
117 |
cctcgttgctggaggagacaaagtagcggctgatacaggaagtgttcattaaaagttcagatccgtgatggaggagacgtcggaggagtaaagcggtgga |
216 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35345382 |
cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtgga |
35345283 |
T |
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| Q |
217 |
gatcga |
222 |
Q |
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|||||| |
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| T |
35345282 |
gatcga |
35345277 |
T |
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Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 2272443 - 2272338
Alignment:
| Q |
117 |
cctcgttgctggaggagacaaagtagcggctgatacaggaagtgttcattaaaagttcagatccgtgatggaggagacgtcggaggagtaaagcggtgga |
216 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2272443 |
cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtgga |
2272344 |
T |
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| Q |
217 |
gatcga |
222 |
Q |
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|||||| |
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| T |
2272343 |
gatcga |
2272338 |
T |
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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 39343930 - 39343825
Alignment:
| Q |
117 |
cctcgttgctggaggagacaaagtagcggctgatacaggaagtgttcattaaaagttcagatccgtgatggaggagacgtcggaggagtaaagcggtgga |
216 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39343930 |
cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtgga |
39343831 |
T |
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| Q |
217 |
gatcga |
222 |
Q |
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|||||| |
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| T |
39343830 |
gatcga |
39343825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 4009774 - 4009669
Alignment:
| Q |
117 |
cctcgttgctggaggagacaaagtagcggctgatacaggaagtgttcattaaaagttcagatccgtgatggaggagacgtcggaggagtaaagcggtgga |
216 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4009774 |
cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtgga |
4009675 |
T |
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| Q |
217 |
gatcga |
222 |
Q |
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|||||| |
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| T |
4009674 |
gatcga |
4009669 |
T |
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Target: scaffold0521 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0521
Description:
Target: scaffold0521; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 4929 - 4986
Alignment:
| Q |
117 |
cctcgttgctggaggagacaaagtagcggctgatacaggaagtgttcattaaaagttc |
174 |
Q |
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||||||||| |||||||||||||| |||||||||| ||| ||||||| |||||||||| |
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| T |
4929 |
cctcgttgccggaggagacaaagtggcggctgatataggcagtgttcgttaaaagttc |
4986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0521; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 4908 - 4942
Alignment:
| Q |
76 |
gagatgaacctatgagaagatcctcgttgccggag |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
4908 |
gagatgaacctatgagaagatcctcgttgccggag |
4942 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 18290784 - 18290841
Alignment:
| Q |
117 |
cctcgttgctggaggagacaaagtagcggctgatacaggaagtgttcattaaaagttc |
174 |
Q |
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|||||||| |||||||| ||||| |||||||||||||||||||||| |||||||||| |
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| T |
18290784 |
cctcgttgtcggaggagataaagtggcggctgatacaggaagtgttcgttaaaagttc |
18290841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 18290763 - 18290797
Alignment:
| Q |
76 |
gagatgaacctatgagaagatcctcgttgccggag |
110 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
18290763 |
gagatgaacctatgagaagatcctcgttgtcggag |
18290797 |
T |
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