View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_165 (Length: 296)
Name: NF1111_low_165
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_165 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 33176044 - 33175946
Alignment:
| Q |
51 |
acaatatactgcacttacctttgatgctctattttacacttgttatttgtcatggttttcttcatccgcaccattttatatccacaattgagtgattcc |
149 |
Q |
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| T |
33176044 |
acaatatactacacttacctttgatgctctgttttacacttgttatttgtcatggttttctttattcgcaccattttatatccacaattgagtgattcc |
33175946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 33175909 - 33175799
Alignment:
| Q |
178 |
caagttgtttgtttaaggttgaacccttcaaacaaaattatgagcaaaacctaatactata-nnnnnnngacattatttcttcaattcagtgtatcaatg |
276 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33175909 |
caagttctttgtttaaggttgaacccttcaaacaaaattatgagcaaaacctaatactatattttttttgacattatttcttcaattcagtgtatcaatg |
33175810 |
T |
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| Q |
277 |
ggcatattctt |
287 |
Q |
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| T |
33175809 |
ggcatattctt |
33175799 |
T |
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