View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_166 (Length: 296)
Name: NF1111_low_166
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_166 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 1172445 - 1172331
Alignment:
| Q |
77 |
aatactttctgtactgttcatattgatgatctcaagtgctcaagctttgaaccaaaacgatgggttcatggaaagtcggaatgatcacaaacatgaacta |
176 |
Q |
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| T |
1172445 |
aatactttctgtactcttcctattgatgatctcaagtgctcaagctttgaaccaaaacgatgggttcgtggaaagtcggaatgatcacaaacatgaacta |
1172346 |
T |
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| Q |
177 |
tctcttcctataaga |
191 |
Q |
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|||||| |||||||| |
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| T |
1172345 |
tctcttactataaga |
1172331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 1165087 - 1164973
Alignment:
| Q |
77 |
aatactttctgtactgttcatattgatgatctcaagtgctcaagctttgaaccaaaacgatgggttcatggaaagtcggaatgatcacaaacatgaacta |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1165087 |
aatactttctgtactgttcatattgatgatctcaagtgctcaagctttgaaccaccatgatgggttcgcggaaagtcggaatgatcacaaacatgaacta |
1164988 |
T |
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| Q |
177 |
tctcttcctataaga |
191 |
Q |
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|| | | |||||||| |
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| T |
1164987 |
tcccatactataaga |
1164973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 1160387 - 1160319
Alignment:
| Q |
123 |
ttgaaccaaaacgatgggttcatggaaagtcggaatgatcacaaacatgaactatctcttcctataaga |
191 |
Q |
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|||||||| || |||||||| ||||||||| |||| |||||||||||||||||| || |||||||| |
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| T |
1160387 |
ttgaaccacaaagatgggtttgtggaaagtcaaaatgcacacaaacatgaactatctgttactataaga |
1160319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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