View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_169 (Length: 295)

Name: NF1111_low_169
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_169
NF1111_low_169
[»] chr1 (10 HSPs)
chr1 (51-267)||(3282442-3282658)
chr1 (10-56)||(284568-284614)
chr1 (10-55)||(24771903-24771948)
chr1 (10-54)||(40783655-40783699)
chr1 (10-52)||(23045279-23045321)
chr1 (10-55)||(33082979-33083024)
chr1 (12-52)||(321863-321903)
chr1 (10-53)||(23526474-23526517)
chr1 (10-52)||(47037852-47037894)
chr1 (14-55)||(41959812-41959853)
[»] chr7 (6 HSPs)
chr7 (10-53)||(25614352-25614395)
chr7 (10-53)||(27814046-27814089)
chr7 (10-53)||(40349196-40349239)
chr7 (10-54)||(36453122-36453166)
chr7 (10-52)||(10981743-10981785)
chr7 (10-54)||(47110685-47110729)
[»] chr8 (11 HSPs)
chr8 (10-60)||(43275391-43275441)
chr8 (10-54)||(11646323-11646367)
chr8 (10-54)||(30999522-30999566)
chr8 (10-53)||(36068315-36068358)
chr8 (10-52)||(7147148-7147190)
chr8 (10-52)||(40058303-40058345)
chr8 (10-52)||(40918731-40918773)
chr8 (10-59)||(3585686-3585735)
chr8 (10-52)||(37345806-37345848)
chr8 (10-55)||(2539927-2539972)
chr8 (10-54)||(11174221-11174265)
[»] chr6 (10 HSPs)
chr6 (10-56)||(8626717-8626763)
chr6 (10-54)||(1605813-1605857)
chr6 (10-52)||(7761535-7761577)
chr6 (10-52)||(29260427-29260469)
chr6 (10-54)||(15064693-15064737)
chr6 (10-53)||(13757442-13757485)
chr6 (10-53)||(17942678-17942721)
chr6 (10-52)||(4129661-4129703)
chr6 (10-52)||(31559738-31559780)
chr6 (14-54)||(15064933-15064973)
[»] chr2 (9 HSPs)
chr2 (10-55)||(23367024-23367069)
chr2 (10-53)||(22388137-22388180)
chr2 (10-56)||(39938405-39938451)
chr2 (10-55)||(1102736-1102781)
chr2 (10-59)||(3519142-3519191)
chr2 (10-57)||(1646522-1646569)
chr2 (10-61)||(40756902-40756953)
chr2 (10-52)||(12969740-12969782)
chr2 (11-52)||(37673743-37673784)
[»] chr5 (9 HSPs)
chr5 (10-54)||(12806851-12806895)
chr5 (10-53)||(30720491-30720534)
chr5 (10-61)||(36561090-36561141)
chr5 (10-52)||(40886610-40886652)
chr5 (10-52)||(25683229-25683271)
chr5 (11-53)||(25773885-25773927)
chr5 (10-53)||(10285057-10285100)
chr5 (10-53)||(23097723-23097766)
chr5 (10-56)||(11319791-11319837)
[»] chr4 (14 HSPs)
chr4 (10-54)||(25704886-25704930)
chr4 (10-54)||(44569072-44569116)
chr4 (10-53)||(14261279-14261322)
chr4 (10-53)||(21310656-21310699)
chr4 (10-53)||(24706246-24706289)
chr4 (10-52)||(12071795-12071837)
chr4 (10-50)||(21661537-21661577)
chr4 (10-50)||(21670301-21670341)
chr4 (10-54)||(22321266-22321310)
chr4 (10-52)||(40122487-40122529)
chr4 (10-55)||(20249011-20249056)
chr4 (10-51)||(21064996-21065037)
chr4 (17-54)||(39295418-39295455)
chr4 (10-42)||(50768097-50768129)
[»] chr3 (10 HSPs)
chr3 (10-53)||(19241667-19241710)
chr3 (10-53)||(29375367-29375410)
chr3 (10-53)||(36881515-36881558)
chr3 (10-52)||(13365078-13365120)
chr3 (10-52)||(46694110-46694152)
chr3 (10-52)||(32834989-32835031)
chr3 (10-52)||(199090-199132)
chr3 (14-54)||(19912177-19912217)
chr3 (14-54)||(38806344-38806384)
chr3 (10-54)||(48820575-48820619)
[»] scaffold0054 (1 HSPs)
scaffold0054 (10-52)||(45688-45730)
[»] scaffold1770 (1 HSPs)
scaffold1770 (10-52)||(396-438)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 51 - 267
Target Start/End: Complemental strand, 3282658 - 3282442
Alignment:
51 tattaattaatgataatatgatgcattaattttcctttaaaggtaaacaatttgaatattttttcaatttatgcgtttcatccaaacattaatgatatta 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3282658 tattaattaatgataatatgatgcattaattttcctttaaaggtaaacaatttgaatattttttcaatttatgcgtttcatccaaacattaatgatatta 3282559  T
151 tgacatattattatgcactttcccacatcaagttctctaatttttatgttgtccactttctcacgtcaagttctccaataaagataaactattaattaag 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3282558 tgacatattattatgcactttcccacatcaagttctctaatttttatgttgtccactttctcacgtcaagttctccaataaagataaactattaattaag 3282459  T
251 caacttctataattttt 267  Q
    |||||||||||||||||    
3282458 caacttctataattttt 3282442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 284568 - 284614
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaa 56  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
284568 attattctctaaaatggacaagtattatgaaacggagggagtattaa 284614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 24771948 - 24771903
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatta 55  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
24771948 attattctctaaaatggacaagtattatgaaacggagggagtatta 24771903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 40783699 - 40783655
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
40783699 attattctctaaaatggacaagtattatgaaacggagggagtatt 40783655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 23045321 - 23045279
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
23045321 attattctctaaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 33082979 - 33083024
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatta 55  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
33082979 attattctttaaaatggacaagtattatgaaacggagggagtatta 33083024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 321863 - 321903
Alignment:
12 tattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||| |||||||||||||||||||||    
321863 tattctctaaaatggacaagtattatgaaacggagggagta 321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 23526474 - 23526517
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
23526474 attattcttcaaaatggacaagtattatgaaacggagggagtat 23526517  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 47037894 - 47037852
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    |||||||| |||||| ||||| |||||||||||||||||||||    
47037894 attattctttaaaatagacaagtattatgaaacggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 41959812 - 41959853
Alignment:
14 ttctctaaaatggacaattattatgaaacggagggagtatta 55  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
41959812 ttctctaaaatggacatgtattttgaaacggagggagtatta 41959853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 25614395 - 25614352
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
25614395 attattctctaaaatggacaattattatgaaacggagggagtat 25614352  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 27814046 - 27814089
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
27814046 attattctctaaaatggacaagtattatgaaacggagggagtat 27814089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 40349196 - 40349239
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
40349196 attattctctaaaatggacaagtattatgaaacggagggagtat 40349239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 36453166 - 36453122
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
36453166 attattctctaaaatggacaagtattatgaaacggagagagtatt 36453122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 10981743 - 10981785
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||| ||||||||||    
10981743 attattctctaaaatggacaaatattatgaaatggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 47110685 - 47110729
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    |||||||||||||||| | || |||||||||||||||||||||||    
47110685 attattctctaaaatgaataagtattatgaaacggagggagtatt 47110729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 43275441 - 43275391
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaattaa 60  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
43275441 attattctctaaaatggacaagtattatgaaacggagggagtattatttaa 43275391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 11646367 - 11646323
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
11646367 attattctctaaaatggacaagtattatgaaacggagggagtatt 11646323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 30999566 - 30999522
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
30999566 attattctctaaaatggacaagtattatgaaacggagggagtatt 30999522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 36068315 - 36068358
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
36068315 attattctctaaaatggacaagtattatgaaacggagggagtat 36068358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7147148 - 7147190
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
7147148 attattctctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40058345 - 40058303
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
40058345 attattctctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40918773 - 40918731
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
40918773 attattctctaaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 3585686 - 3585735
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaatta 59  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
3585686 attattctctaaaatagacaagtattatgaaacggatggagtattaatta 3585735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 37345806 - 37345848
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
37345806 attattctctaaaatggacaagtattatgaaacggaaggagta 37345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 2539972 - 2539927
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatta 55  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||    
2539972 attattctttaaaatggacaagtattatgaaacggaaggagtatta 2539927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 11174265 - 11174221
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||    
11174265 attattctttaaaatgaacaagtattatgaaacggagggagtatt 11174221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 8626717 - 8626763
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaa 56  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
8626717 attattctctaaaatggacaagtattatgaaacggagggagtattaa 8626763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 1605813 - 1605857
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
1605813 attattctctaaaatggacaagtattatgaaacggagggagtatt 1605857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7761535 - 7761577
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
7761535 attattctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 29260427 - 29260469
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
29260427 attattctctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 15064737 - 15064693
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
15064737 attattctccaaaatggacaagtattatgaaacggagggagtatt 15064693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 13757442 - 13757485
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
13757442 attattctctaaaatggacaagtattatgaaacggatggagtat 13757485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 17942678 - 17942721
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||    
17942678 attattctccaaaatggacaagtattatgaaacggagggagtat 17942721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 4129661 - 4129703
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
4129661 attattttctaaaatggacaagtattatgaaacggagggagta 4129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 31559780 - 31559738
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    |||||||||||||||||| || |||||||||||||||||||||    
31559780 attattctctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 15064933 - 15064973
Alignment:
14 ttctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||  |||| ||||||||||||||||||    
15064933 ttctctaaaatggacatgtattttgaaacggagggagtatt 15064973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 23367024 - 23367069
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatta 55  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
23367024 attattctctaaaatggacaagtattatgaaacggagggagtatta 23367069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 22388180 - 22388137
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
22388180 attattctctaaaatggacaagtattatgaaacggagggagtat 22388137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 39938405 - 39938451
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaa 56  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||    
39938405 attattctctaaaatggacaagtattataaaacggagggagtattaa 39938451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 1102736 - 1102781
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatta 55  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||    
1102736 attattctctcaaatggacaagtattatgaaacggagggagtatta 1102781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 3519142 - 3519191
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaatta 59  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||||    
3519142 attattctctaaaatggacaagtattatgaaacggaggaagtatttatta 3519191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 1646522 - 1646569
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaat 57  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||    
1646522 attattctctaaaatggacaggtattatgaaacggagggagtagtaat 1646569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 40756953 - 40756902
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaattaat 61  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||    
40756953 attattctccaaaatggacaagtattatgaaacggagggagtagtaagtaat 40756902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 12969782 - 12969740
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
12969782 attattctccaaaatggacaagtattatgaaacggagggagta 12969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 37673784 - 37673743
Alignment:
11 ttattctctaaaatggacaattattatgaaacggagggagta 52  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
37673784 ttattctctaaaatggacaagtattatgaaacggaaggagta 37673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 12806895 - 12806851
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
12806895 attattctctaaaatggacaagtattatgaaacggagggagtatt 12806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 30720534 - 30720491
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
30720534 attattctctaaaatggacaagtattatgaaacggagggagtat 30720491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 36561141 - 36561090
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaattaat 61  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||    
36561141 attattctctaaaatggacaagtattatgaaacggagggagtactaactaat 36561090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40886652 - 40886610
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
40886652 attattctctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 25683271 - 25683229
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
25683271 attattctccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 25773885 - 25773927
Alignment:
11 ttattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    |||||||||||||||||||| ||||||||||||||| ||||||    
25773885 ttattctctaaaatggacaagtattatgaaacggagagagtat 25773927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 10285100 - 10285057
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||    
10285100 attattctttaaaatagacaagtattatgaaacggagggagtat 10285057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 23097766 - 23097723
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||    
23097766 attattctccaaaatggacaagtattatgaaacggaaggagtat 23097723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 11319791 - 11319837
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtattaa 56  Q
    ||||||||||||||| ||||| |||||||||||||| | ||||||||    
11319791 attattctctaaaatagacaagtattatgaaacggatgaagtattaa 11319837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 25704886 - 25704930
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
25704886 attattctctaaaatggacaagtattatgaaacggagggagtatt 25704930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 44569072 - 44569116
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
44569072 attattctctaaaatggacaagtattatgaaacggagggagtatt 44569116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 14261279 - 14261322
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
14261279 attattctctaaaatggacaagtattatgaaacggagggagtat 14261322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 21310656 - 21310699
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
21310656 attattctctaaaatggacaagtattatgaaacggagggagtat 21310699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 24706289 - 24706246
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
24706289 attattctctaaaatggacaagtattatgaaacggagggagtat 24706246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 12071795 - 12071837
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
12071795 attattctctaaaatggacaagtattatgaaacggagggagta 12071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21661577 - 21661537
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggag 50  Q
    ||||||||||||||||||||| |||||||||||||||||||    
21661577 attattctctaaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21670341 - 21670301
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggag 50  Q
    ||||||||||||||||||||| |||||||||||||||||||    
21670341 attattctctaaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 22321310 - 22321266
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
22321310 attattctctaaaatagacaagtattatgaaacggagggagtatt 22321266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40122529 - 40122487
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
40122529 attattctctaaaatggacaagtattatgaaacggagagagta 40122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 20249056 - 20249011
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatta 55  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||    
20249056 attattctccaaaatggacaagtattatgaaacggagtgagtatta 20249011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 21064996 - 21065037
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagt 51  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
21064996 attattctctaaaatgaacaagtattatgaaacggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 39295418 - 39295455
Alignment:
17 tctaaaatggacaattattatgaaacggagggagtatt 54  Q
    |||||||||||||| |||||||||||||| ||||||||    
39295418 tctaaaatggacaagtattatgaaacggaaggagtatt 39295455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 50768097 - 50768129
Alignment:
10 attattctctaaaatggacaattattatgaaac 42  Q
    ||||||||||||||||||||| |||||||||||    
50768097 attattctctaaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 19241710 - 19241667
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
19241710 attattctctaaaatggacaagtattatgaaacggagggagtat 19241667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 29375367 - 29375410
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
29375367 attattctctaaaatggacaagtattatgaaacggagggagtat 29375410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 36881515 - 36881558
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtat 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
36881515 attattctctaaaatggacaagtattatgaaacggagggagtat 36881558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 13365078 - 13365120
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
13365078 attattctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 46694152 - 46694110
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
46694152 attattctctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 32835031 - 32834989
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
32835031 attattctctacaatggacaagtattatgaaacggagggagta 32834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 199090 - 199132
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    |||||| |||||||||||||| |||||||||| ||||||||||    
199090 attattttctaaaatggacaactattatgaaatggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 19912177 - 19912217
Alignment:
14 ttctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||  |||| ||||||||||||||||||    
19912177 ttctctaaaatggacatgtattttgaaacggagggagtatt 19912217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 38806344 - 38806384
Alignment:
14 ttctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    ||||||||||||||||  |||| ||||||||||||||||||    
38806344 ttctctaaaatggacatgtattttgaaacggagggagtatt 38806384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 48820575 - 48820619
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagtatt 54  Q
    |||||| | |||||||||||| |||||||||||||||| ||||||    
48820575 attattttttaaaatggacaagtattatgaaacggaggaagtatt 48820619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 45688 - 45730
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
45688 attattctctaaaatggacaagtattatgaaacggagggagta 45730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 396 - 438
Alignment:
10 attattctctaaaatggacaattattatgaaacggagggagta 52  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
396 attattttctaaaatggacaagtattatgaaacggagggagta 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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