View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_173 (Length: 292)
Name: NF1111_low_173
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_173 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 41016797 - 41016964
Alignment:
| Q |
56 |
gaaaatccatagaaacagcacgaggtggacaacgaccaatatcaaaagcaactttaaagttggaaaaaataacacaagtttcatgtcctccaattgataa |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41016797 |
gaaaatccatagaaacagcacgaggtggacaacgaccaatatcaaaagcaactctaaagttggaaaaaataacacaagtttcatgtcctccaattgataa |
41016896 |
T |
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| Q |
156 |
accctcaacttggtatccttcaatattcaaaccctttaatttcttctttgactctgtttctgaacttt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41016897 |
accctcaacttggtatccttcaatattcaaaccctttgatttcttctttgactctgtttctgaacttt |
41016964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 56 - 245
Target Start/End: Original strand, 41018540 - 41018729
Alignment:
| Q |
56 |
gaaaatccatagaaacagcacgaggtggacaacgaccaatatcaaaagcaactttaaagttggaaaaaataacacaagtttcatgtcctccaattgataa |
155 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41018540 |
gaaaatccatagaaacaaaacgaggtggacaacgaccaatatcaaaagcaattctaaagttggaaaaaataacacaaatttcatgtcctccaattgataa |
41018639 |
T |
|
| Q |
156 |
accctcaacttggtatccttcaatattcaaaccctttaatttcttctttgactctgtttctgaactttctgactttaacttcttctcagt |
245 |
Q |
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| T |
41018640 |
actctcaacttggtatccttcaatattcaaaccctttgatttcttctttgactctgtttctgaacttcctgactttaacttcttctcagt |
41018729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 12114577 - 12114744
Alignment:
| Q |
56 |
gaaaatccatagaaacagcacgaggtggacaacgaccaatatcaaaagcaactttaaagttggaaaaaataacacaagtttcatgtcctccaattgataa |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12114577 |
gaaaatccatagaaacagcacgaggtggacaacgaccaatatcaaaagcaactctaaagtgtgaaaaaataacacaagtttcatgtcctccaattgataa |
12114676 |
T |
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| Q |
156 |
accctcaacttggtatccttcaatattcaaaccctttaatttcttctttgactctgtttctgaacttt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12114677 |
accctcaacttggtatccttcaatattcaaaccctttgatttcttctttgactctgtttctgaacttt |
12114744 |
T |
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