View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_174 (Length: 292)
Name: NF1111_low_174
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_174 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 31051937 - 31051892
Alignment:
| Q |
59 |
tgcaacaccctaatcttatcttataatattagaaataaaacgagta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31051937 |
tgcaacaccctaatcttatcttataatattagaaataaaacgagta |
31051892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 31051804 - 31051759
Alignment:
| Q |
193 |
cataaggaacaacaacagaccaatgaattagcgcggggtacggttc |
238 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
31051804 |
cataaggaacaacaacagaccaacgaactagcgcggggtacggttc |
31051759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 19631583 - 19631617
Alignment:
| Q |
59 |
tgcaacaccctaatcttatcttataatattagaaa |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
19631583 |
tgcaacaccctaatcttatcttataatattagaaa |
19631617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 35600713 - 35600679
Alignment:
| Q |
59 |
tgcaacaccctaatcttatcttataatattagaaa |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35600713 |
tgcaacaccctaatcttatcttataatattagaaa |
35600679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University