View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_175 (Length: 291)

Name: NF1111_low_175
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_175
NF1111_low_175
[»] chr8 (12 HSPs)
chr8 (56-236)||(17837077-17837255)
chr8 (56-168)||(37590026-37590138)
chr8 (56-168)||(14505760-14505872)
chr8 (56-168)||(15990399-15990511)
chr8 (56-158)||(19299020-19299122)
chr8 (56-169)||(34723841-34723954)
chr8 (56-169)||(27978784-27978897)
chr8 (56-169)||(28036053-28036166)
chr8 (105-163)||(20526164-20526224)
chr8 (103-168)||(1186631-1186696)
chr8 (104-169)||(2246709-2246774)
chr8 (104-169)||(14657694-14657759)
[»] chr7 (21 HSPs)
chr7 (56-169)||(3896504-3896617)
chr7 (56-140)||(3205148-3205232)
chr7 (60-160)||(26016571-26016671)
chr7 (56-168)||(30502545-30502657)
chr7 (56-168)||(32480254-32480366)
chr7 (56-169)||(17238661-17238774)
chr7 (56-168)||(13014952-13015064)
chr7 (56-160)||(24226204-24226308)
chr7 (56-168)||(15633268-15633380)
chr7 (104-160)||(33611030-33611086)
chr7 (105-169)||(48770200-48770264)
chr7 (59-169)||(8118787-8118897)
chr7 (59-169)||(47081640-47081750)
chr7 (104-170)||(48100727-48100793)
chr7 (56-169)||(41601472-41601585)
chr7 (132-168)||(3204632-3204668)
chr7 (123-163)||(3960062-3960102)
chr7 (105-169)||(44435540-44435604)
chr7 (104-171)||(27810623-27810690)
chr7 (56-170)||(11343131-11343245)
chr7 (56-169)||(27458177-27458290)
[»] chr4 (20 HSPs)
chr4 (56-167)||(30859402-30859513)
chr4 (56-168)||(30190936-30191048)
chr4 (56-168)||(55227651-55227763)
chr4 (56-158)||(54823708-54823810)
chr4 (59-170)||(4235355-4235466)
chr4 (104-169)||(13686095-13686160)
chr4 (56-170)||(37061036-37061150)
chr4 (56-169)||(14264078-14264191)
chr4 (58-169)||(16582326-16582437)
chr4 (115-160)||(34301907-34301952)
chr4 (124-170)||(33480499-33480545)
chr4 (107-156)||(12355314-12355363)
chr4 (56-169)||(20527767-20527880)
chr4 (107-160)||(27066343-27066396)
chr4 (107-160)||(27087444-27087497)
chr4 (56-160)||(18878213-18878317)
chr4 (105-160)||(54027699-54027754)
chr4 (117-160)||(54886596-54886639)
chr4 (123-171)||(4227893-4227941)
chr4 (127-163)||(25435523-25435559)
[»] chr5 (12 HSPs)
chr5 (56-168)||(22292418-22292530)
chr5 (60-169)||(18759758-18759867)
chr5 (56-160)||(28246296-28246404)
chr5 (104-170)||(23622590-23622656)
chr5 (104-170)||(29955451-29955517)
chr5 (57-168)||(2157766-2157877)
chr5 (107-160)||(29754951-29755004)
chr5 (105-169)||(36045005-36045069)
chr5 (104-160)||(13948786-13948842)
chr5 (60-169)||(21092250-21092356)
chr5 (115-156)||(27493351-27493392)
chr5 (103-163)||(3050951-3051011)
[»] chr2 (13 HSPs)
chr2 (56-168)||(16206578-16206690)
chr2 (101-170)||(23762495-23762564)
chr2 (56-169)||(44886334-44886447)
chr2 (92-170)||(23761362-23761440)
chr2 (92-170)||(23789506-23789584)
chr2 (93-169)||(23379944-23380020)
chr2 (56-169)||(20661232-20661345)
chr2 (104-170)||(33650964-33651030)
chr2 (115-160)||(2973416-2973461)
chr2 (56-93)||(11502361-11502398)
chr2 (56-169)||(11818431-11818544)
chr2 (105-169)||(11553415-11553479)
chr2 (104-164)||(28172896-28172956)
[»] chr3 (23 HSPs)
chr3 (60-167)||(6006025-6006132)
chr3 (56-156)||(31973537-31973637)
chr3 (56-169)||(31935279-31935392)
chr3 (56-168)||(17790191-17790303)
chr3 (56-168)||(19098633-19098745)
chr3 (56-169)||(53394874-53394986)
chr3 (59-169)||(31809204-31809314)
chr3 (58-164)||(49499451-49499557)
chr3 (57-171)||(53437576-53437689)
chr3 (56-153)||(31660977-31661074)
chr3 (56-168)||(31228277-31228389)
chr3 (56-168)||(49644509-49644621)
chr3 (56-171)||(19602905-19603020)
chr3 (57-169)||(18357148-18357260)
chr3 (57-168)||(16739419-16739530)
chr3 (56-160)||(29372949-29373053)
chr3 (105-160)||(36144814-36144869)
chr3 (59-169)||(8566056-8566166)
chr3 (72-160)||(35906929-35907017)
chr3 (123-170)||(12526575-12526622)
chr3 (123-169)||(38015051-38015097)
chr3 (104-169)||(18342722-18342787)
chr3 (115-160)||(18765590-18765635)
[»] chr6 (14 HSPs)
chr6 (56-169)||(16890249-16890362)
chr6 (56-165)||(1493234-1493343)
chr6 (56-171)||(34355730-34355845)
chr6 (56-160)||(9959266-9959370)
chr6 (114-168)||(10910972-10911026)
chr6 (104-170)||(13768240-13768306)
chr6 (56-154)||(30589014-30589112)
chr6 (107-160)||(30140935-30140988)
chr6 (115-160)||(22736528-22736573)
chr6 (105-169)||(13825560-13825624)
chr6 (105-164)||(16416689-16416748)
chr6 (105-155)||(187123-187173)
chr6 (115-160)||(17752262-17752307)
chr6 (124-168)||(15299934-15299978)
[»] chr1 (20 HSPs)
chr1 (56-168)||(30033621-30033733)
chr1 (56-169)||(21701461-21701574)
chr1 (56-169)||(24083414-24083529)
chr1 (56-168)||(41117228-41117340)
chr1 (56-168)||(9361806-9361918)
chr1 (56-168)||(24065252-24065364)
chr1 (104-164)||(49702512-49702572)
chr1 (76-170)||(4614949-4615043)
chr1 (105-163)||(47726351-47726409)
chr1 (105-163)||(47747657-47747715)
chr1 (104-164)||(3603514-3603574)
chr1 (56-169)||(49372357-49372470)
chr1 (104-160)||(6507908-6507964)
chr1 (104-160)||(34696100-34696156)
chr1 (127-170)||(13288225-13288268)
chr1 (105-160)||(16678741-16678796)
chr1 (106-163)||(2002531-2002588)
chr1 (115-160)||(18122822-18122867)
chr1 (104-169)||(29115498-29115563)
chr1 (105-169)||(5185260-5185324)
[»] scaffold0040 (1 HSPs)
scaffold0040 (80-168)||(62477-62565)
[»] scaffold0031 (1 HSPs)
scaffold0031 (104-160)||(44564-44620)
[»] scaffold0643 (1 HSPs)
scaffold0643 (105-160)||(1136-1191)
[»] scaffold0341 (2 HSPs)
scaffold0341 (104-160)||(1933-1989)
scaffold0341 (104-160)||(9589-9645)
[»] scaffold0019 (1 HSPs)
scaffold0019 (104-163)||(73332-73391)
[»] scaffold0789 (1 HSPs)
scaffold0789 (56-169)||(4204-4317)
[»] scaffold0198 (1 HSPs)
scaffold0198 (105-170)||(21809-21874)
[»] scaffold0650 (1 HSPs)
scaffold0650 (105-153)||(307-355)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 17837255 - 17837077
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||  |||||||||||| |||||||||||||||||||||||||||||    
T  17837255 gttgctcatactcttgcaagagaagccacgtctttagctagtcctgccgtttatttcgatatacccgattatattgaatctttaattattaatgaaatgc 17837156  T
Q  156 tataaacatgtttctccnnnnnnnnnggttgcgttgtcaacttgtaatatctttagtatgttaaaattagtatcagtgctt 236  Q
    ||||| ||||||||||           ||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  17837155 tataagcatgtttctc--taaaaaaaagttgcgtcgtcaacttgtaatatctttagtatgttaaaattagtatgagtgctt 17837077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 37590138 - 37590026
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||| || |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| || | ||||||||||||||||    
T  37590138 gttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgtttattttaatatacccaattgtattgaaactcttattattaatgaaatgc 37590039  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  37590038 tataagcatgttt 37590026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 14505760 - 14505872
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||| || |||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||    
T  14505760 gttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgc 14505859  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  14505860 tataagcatgttt 14505872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 15990511 - 15990399
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||| || |||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||    
T  15990511 gttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgc 15990412  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  15990411 tataagcatgttt 15990399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 19299122 - 19299020
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||| |||||||||||||||||| | |||||||||| ||||| | |||||||||||| |||||||| |||||||||||  ||| ||||||||||||||||    
T  19299122 gttgttcatgctcttacaagagaggtcacgtctttagctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgc 19299023  T
Q  156 tat 158  Q
    |||    
T  19299022 tat 19299020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 34723954 - 34723841
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||| ||||| |||||||||||||||||||| |||||   |||||||||| | |||||||| |||||||||||||| | || |||||||||||||    
T  34723954 gttgctcatactcttgcaagagaagccacgtctttagctagtctcgccgtttattatgatatacccaattgtattgaatctattatgattaatgaaatgc 34723855  T
Q  156 tataaacatgtttc 169  Q
    | ||| ||| ||||    
T  34723854 tctaagcatctttc 34723841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 27978784 - 27978897
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| || |||| |||||||||||| ||||| |   |||||||| | |||||||| ||| ||||||| || | || ||||||||||||     
T  27978784 gttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatgatatacccaattttattgaaactattatgattaatgaaatgt 27978883  T
Q  156 tataaacatgtttc 169  Q
    |||||||| |||||    
T  27978884 tataaacacgtttc 27978897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 28036053 - 28036166
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| || |||| |||||||||||| ||||| |   |||||||| | |||||||| ||| ||||||| || | || ||||||||||||     
T  28036053 gttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatgatatacccaattttattgaaactattatgattaatgaaatgt 28036152  T
Q  156 tataaacatgtttc 169  Q
    |||||||| |||||    
T  28036153 tataaacacgtttc 28036166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 20526224 - 20526164
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattat--taatgaaatgctataaaca 163  Q
    |||||||| |||||||| ||||||||||| ||||||||||  |||||||||||||||||||    
T  20526224 tttattttcatatacccaattgtattgaaactttaattatactaatgaaatgctataaaca 20526164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 1186631 - 1186696
Alignment:
Q  103 cgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgttt 168  Q
    ||||||||||||||||  | ||| ||||||| |||| |||||||||||||||||| ||| ||||||    
T  1186631 cgtttattttaatatattcaattatattgaaacttttattattaatgaaatgctacaaatatgttt 1186696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 2246774 - 2246709
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    ||||||||| | ||||| |||||||||||| || | ||||||||||||||||||||| ||| ||||    
T  2246774 gtttattttcacatacctgattgtattgaacctcttattattaatgaaatgctataagcatatttc 2246709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 14657759 - 14657694
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    ||||||||| |||||||  ||||||||||| || | || || ||||||||||||||| ||||||||    
T  14657759 gtttattttgatatacctaattgtattgaaactcttataatcaatgaaatgctataagcatgtttc 14657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 3896504 - 3896617
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||| ||| ||||||| |||||||||||| ||||| | |||||||||||| |||||||||||||||||||| || | ||||||||||||||||    
T  3896504 gttgctcatgcacttgcaagagaggccacgtctttagctagtcccgccgtttattttgatatacccgattgtattgaaactcttattattaatgaaatgc 3896603  T
Q  156 tataaacatgtttc 169  Q
    ||||| ||||||||    
T  3896604 tataagcatgtttc 3896617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 3205232 - 3205148
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaa 140  Q
    ||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||  ||||||||||||||||| |||||||||    
T  3205232 gttgctcatgctcttgcaagagaagccacgtctttagctagtcccgccgtttatttcgatatacccgattgtattaaatctttaa 3205148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 26016571 - 26016671
Alignment:
Q  60 ctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctata 159  Q
    ||||||| |||||||||||  ||||||||||||||||| ||||||  |||||| |||||||| |||||||||||| | | ||||||||||||||||||||    
T  26016571 ctcatgcacttacaagagagaccacgtctttaactagtcctgccggctattttgatatacccaattgtattgaatatcttattattaatgaaatgctata 26016670  T
Q  160 a 160  Q
    |    
T  26016671 a 26016671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 30502545 - 30502657
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||| ||||| ||||||| |||||||| ||| ||||| | || ||||||||| |||||||||||||||||||| || | |||||||||||||||     
T  30502545 gttgctcatactcttgcaagagaggccacgtccttagctagtcccgcagtttattttgatatacccgattgtattgaaactcttattattaatgaaatgt 30502644  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  30502645 tataagcatgttt 30502657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 32480254 - 32480366
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||| ||||| |||| || |||||||||||| ||||| | || |||||||||||||||| | ||||||||||| || | ||||||||||||||||    
T  32480254 gttgctcatactcttgcaagggaggccacgtctttagctagtcccgcagtttattttaatatactcaattgtattgaaactcttattattaatgaaatgc 32480353  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  32480354 tataagcatgttt 32480366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 17238774 - 17238661
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||| ||| ||||||||||||| |  ||||||||| |  |  |||||| | |||||||||| ||||||||||| |||||||| ||||||||||    
T  17238774 gttgctcatgcacttgcaagagaagccacattcttaactagtcccactatttattatgatatacccgaatgtattgaatccttaattatcaatgaaatgc 17238675  T
Q  156 tataaacatgtttc 169  Q
    ||||| ||||||||    
T  17238674 tataagcatgtttc 17238661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 13015064 - 13014952
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||||||| ||||||   || ||||| |||  ||||||||| | |||||| ||||||||||| || | ||||| ||||||||||    
T  13015064 gttgctcatgctcttgcaagagaatccacgttactagctagtcctgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgc 13014965  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  13014964 tataagcatgttt 13014952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 24226308 - 24226204
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| || |||| |||||||||||| ||||| | | |||||||| | ||||||||  ||||||| || || | ||||||||||||||||    
T  24226308 gttgctcatgctcttgcacgagaggccacgtctttagctagtcccgacgtttattatgatatacccacttgtatttaaactcttattattaatgaaatgc 24226209  T
Q  156 tataa 160  Q
    |||||    
T  24226208 tataa 24226204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 15633268 - 15633380
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||| ||||| |||||||||||||||   || ||||| | |  ||||| ||| | |||||| ||||||||||| || | ||||| ||||||||||    
T  15633268 gttgctcatactcttgcaagagaagccacgttactagctagtcccgttgtttactttgaaatacccaattgtattgaaactattattatcaatgaaatgc 15633367  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  15633368 tataagcatgttt 15633380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 33611086 - 33611030
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||||| |||||||||||||||||||| || | ||||||||| |||||||||||    
T  33611086 gtttattttcatatacccgattgtattgaacctcttattattaataaaatgctataa 33611030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 48770200 - 48770264
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    |||||||| |||||||||| ||||||||| || | ||||||||||||||||||||| ||| ||||    
T  48770200 tttattttcatatacccgaatgtattgaaactcttattattaatgaaatgctataagcatatttc 48770264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 8118897 - 8118787
Alignment:
Q  59 gctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctat 158  Q
    |||||||||||| || |||| |||||||||||| ||||| | || || |||| | |||||||| ||||||||||  || | || || |||||||||||||    
T  8118897 gctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgatatacccaattgtattgagactattatgatcaatgaaatgctat 8118798  T
Q  159 aaacatgtttc 169  Q
    || ||| ||||    
T  8118797 aagcatctttc 8118787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 47081750 - 47081640
Alignment:
Q  59 gctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctat 158  Q
    |||||||||||| || |||| |||||||||||| ||||| | || || |||| | |||||||| ||||||||||  || | || || |||||||||||||    
T  47081750 gctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgatatacccaattgtattgagactattatgatcaatgaaatgctat 47081651  T
Q  159 aaacatgtttc 169  Q
    || ||| ||||    
T  47081650 aagcatctttc 47081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 48100793 - 48100727
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    |||||||||| |||| | ||||||||||||| | | ||||||||||||||||||||| ||| |||||    
T  48100793 gtttattttagtatatctgattgtattgaatatcttattattaatgaaatgctataagcatatttct 48100727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 41601472 - 41601585
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||| |||||||||| || |||| ||||| |||||| ||||| | || ||||||| | |||||||| ||||||||||| || | || || | ||||||||    
T  41601472 gttgttcatgctcttgcacgagaggccacatctttagctagtcccgctgtttattatgatatacccaattgtattgaaactattatgatgagtgaaatgc 41601571  T
Q  156 tataaacatgtttc 169  Q
    ||||| || |||||    
T  41601572 tataagcacgtttc 41601585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 3204668 - 3204632
Alignment:
Q  132 aatctttaattattaatgaaatgctataaacatgttt 168  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3204668 aatctttaattattaatgaaatgctataagcatgttt 3204632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 3960102 - 3960062
Alignment:
Q  123 attgtattgaatctttaattattaatgaaatgctataaaca 163  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  3960102 attgtattgaatctttaataattaatgaaatgttataaaca 3960062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 44435540 - 44435604
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    |||||||||||||| |||| |||||||||||| | ||||||||| ||||| ||||| ||| ||||    
T  44435540 tttattttaatatatccgaatgtattgaatctcttattattaataaaatgttataatcatatttc 44435604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 27810623 - 27810690
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttctc 171  Q
    ||||||||||||||||||  |||||||||| || | ||||| |||||||| |||||| ||| ||||||    
T  27810623 gtttattttaatatacccagttgtattgaaactattattataaatgaaattctataagcatatttctc 27810690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 11343131 - 11343245
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||| ||| |||||| ||||||||   |  ||||| | || ||||||||| |||||||| | | ||||||| |  | ||||| ||||||||||    
T  11343131 gttgctcatgcccttgcaagagtagccacgttgctcgctagtcccgctgtttattttcatataccctaatatattgaaacacttattatcaatgaaatgc 11343230  T
Q  156 tataaacatgtttct 170  Q
    ||||||||| |||||    
T  11343231 tataaacatatttct 11343245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 27458177 - 27458290
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||| | |||||| | ||||| |||||||| ||| |||| || |  ||||||| | | |||||| |||||||||||||  | |||||||||||| |||    
T  27458177 gttgctaacgctcttgctagagatgccacgtccttagctagctccgtagtttattatgacatacccaattgtattgaatccattattattaatgaattgc 27458276  T
Q  156 tataaacatgtttc 169  Q
    | ||| ||||||||    
T  27458277 tttaagcatgtttc 27458290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 167
Target Start/End: Original strand, 30859402 - 30859513
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||| || |||||||||||||||||| | ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||    
T  30859402 gttgctcatgctcttgcaagggaggccacgtctttaactagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgc 30859501  T
Q  156 tataaacatgtt 167  Q
    ||||| ||||||    
T  30859502 tataagcatgtt 30859513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 30191048 - 30190936
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||||||||||||||||||  ||||||||||| ||||| | |||||||||||| ||||| || ||||||||||| || | |||||||||||||||     
T  30191048 gttgctcatgctcttacaagagagaccacgtctttagctagtcccgccgtttattttgatatatccaattgtattgaaactcttattattaatgaaatgt 30190949  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  30190948 tataagcatgttt 30190936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 55227651 - 55227763
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||| || ||||| |||||| ||||| | ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||    
T  55227651 gttgctcatgctcttgcaagggaggccacatctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgc 55227750  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  55227751 tataagcatgttt 55227763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 54823708 - 54823810
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||| |||||||||||||||||| | |||||||||| ||||| | |||||||||||| |||||||| |||||||||||  ||| ||||||||||||||||    
T  54823708 gttgttcatgctcttacaagagaggtcacgtctttagctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgc 54823807  T
Q  156 tat 158  Q
    |||    
T  54823808 tat 54823810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 4235355 - 4235466
Alignment:
Q  59 gctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctat 158  Q
    |||||||||||| || |||| |||||||||||| |||||||||||||||||| | ||||| || ||||||||||  || | || ||||||||||||||||    
T  4235355 gctcatgctcttgcacgagaggccacgtctttagctagttctgccgtttattatgatatatccaattgtattgagactattatgattaatgaaatgctat 4235454  T
Q  159 aaacatgtttct 170  Q
    || ||| |||||    
T  4235455 aagcatatttct 4235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 13686095 - 13686160
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||    
T  13686095 gtttattttcatatacccgattgtattgaatctcttattattaatgaaatgctataagcatatttc 13686160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 37061150 - 37061036
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||  ||| |||||||||||| || | || ||||| | |  ||||||||||| ||||||||||||||||||||| | |||||||| ||||||     
T  37061150 gttgctcatgtgcttgcaagagaagccatgtttctagctagtcccgttgtttattttaacatacccgattgtattgaatctcttattattaacgaaatgt 37061051  T
Q  156 tataaacatgtttct 170  Q
    ||||| ||| |||||    
T  37061050 tataagcatatttct 37061036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 14264078 - 14264191
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||||||| |  ||||||| ||||||||||   ||||||||||| |||||| | || |||||  ||||||| || || | ||||||||||||||||    
T  14264078 gttgctcatgctttagcaagagaggccacgtcttatgctagttctgccatttattatgatgtacccagttgtattaaaactcttattattaatgaaatgc 14264177  T
Q  156 tataaacatgtttc 169  Q
    ||||| ||||||||    
T  14264178 tataagcatgtttc 14264191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 16582437 - 16582326
Alignment:
Q  58 tgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgcta 157  Q
    ||||||||||||| ||||||||| |||||   || ||||| |  ||||||||||| | ||||||  |||||||||| || | ||||||||||| ||||||    
T  16582437 tgctcatgctcttgcaagagaagtcacgttactagctagtcccaccgtttattttgaaatacccagttgtattgaaactattattattaatgatatgcta 16582338  T
Q  158 taaacatgtttc 169  Q
    ||| ||||||||    
T  16582337 taatcatgtttc 16582326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 34301907 - 34301952
Alignment:
Q  115 tatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  34301907 tatacccaattgtattgaatctttaatcattaatgaaatgctataa 34301952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 33480499 - 33480545
Alignment:
Q  124 ttgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    ||||||||||||| | ||||||||||||||||||||||||| |||||    
T  33480499 ttgtattgaatctattattattaatgaaatgctataaacatctttct 33480545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 12355314 - 12355363
Alignment:
Q  107 tattttaatatacccgattgtattgaatctttaattattaatgaaatgct 156  Q
    |||||| |||||||| ||||||||||| |||| |||||||||||||||||    
T  12355314 tattttcatatacccaattgtattgaaactttgattattaatgaaatgct 12355363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 20527880 - 20527767
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| ||||||| |||  ||   |  ||||| | ||| |||||| | |||||||||||||||||||| || | ||||| ||||||||||    
T  20527880 gttgctcatgctcttgcaagagaggccttgttactcgctagtcccgccatttattatgatatacccgattgtattgaaactcttattatcaatgaaatgc 20527781  T
Q  156 tataaacatgtttc 169  Q
    |||||  |||||||    
T  20527780 tataagtatgtttc 20527767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 27066396 - 27066343
Alignment:
Q  107 tattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||| |||||| | ||||||||||| |||| |||||||||||||||||||||    
T  27066396 tattttcatatactcaattgtattgaaactttgattattaatgaaatgctataa 27066343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 27087497 - 27087444
Alignment:
Q  107 tattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||| |||||| | ||||||||||| |||| |||||||||||||||||||||    
T  27087497 tattttcatatactcaattgtattgaaactttgattattaatgaaatgctataa 27087444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 18878213 - 18878317
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||||||| || || |||| ||||||| |||| ||| |   | |||||||| | ||||||||  |||||||||| || | ||||||||||||||||    
T  18878213 gttgctcatgcttttgcacgagaggccacgtttttagctaatctcgtcgtttattatgatatacccacttgtattgaaactattattattaatgaaatgc 18878312  T
Q  156 tataa 160  Q
    |||||    
T  18878313 tataa 18878317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 54027754 - 54027699
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||| |||||||| ||| ||||||| |||| ||||||||||||||| |||||    
T  54027754 tttattttcatatacccaattatattgaaactttgattattaatgaaatgatataa 54027699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 54886596 - 54886639
Alignment:
Q  117 tacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  54886596 tacccgattgtattgaatctattatcattaatgaaatgctataa 54886639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 4227941 - 4227893
Alignment:
Q  123 attgtattgaatctttaattattaatgaaatgctataaacatgtttctc 171  Q
    ||||||||||| || | || ||||||||||||||||||||| |||||||    
T  4227941 attgtattgaaactattatgattaatgaaatgctataaacacgtttctc 4227893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 25435523 - 25435559
Alignment:
Q  127 tattgaatctttaattattaatgaaatgctataaaca 163  Q
    |||||||||||| || |||||||||||||||||||||    
T  25435523 tattgaatctttgatcattaatgaaatgctataaaca 25435559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 22292418 - 22292530
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||| || |||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||    
T  22292418 gttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgc 22292517  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  22292518 tataagcatgttt 22292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 18759758 - 18759867
Alignment:
Q  60 ctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctata 159  Q
    ||||||||||| |||||||  |||| ||||||  |||| | |||||||||||| |||||||| ||| ||||||| |||| ||||||||||||||||||||    
T  18759758 ctcatgctcttgcaagagagaccacatctttagttagtcccgccgtttattttgatatacccaattatattgaaacttttattattaatgaaatgctata 18759857  T
Q  160 aacatgtttc 169  Q
    | ||||||||    
T  18759858 agcatgtttc 18759867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 28246296 - 28246404
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaat----ctttaattattaatgaa 151  Q
    |||| |||||||||| ||||||| | |||||||||||||||| | |||||||||||| |||||||| ||||||||||||    || | ||||||||||||    
T  28246296 gttgttcatgctcttgcaagagaggtcacgtctttaactagtcccgccgtttatttttatatacccaattgtattgaatgaaactcttattattaatgaa 28246395  T
Q  152 atgctataa 160  Q
    ||| |||||    
T  28246396 atgttataa 28246404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 23622590 - 23622656
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||    
T  23622590 gtttattttaacatacccgattgtattgaatctcttattattaatgaaatgctataagcatatttct 23622656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 29955517 - 29955451
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  29955517 gtttattttaacatacctgattgtattgaatcttttattattaatgaaatgttataatcatatttct 29955451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 2157877 - 2157766
Alignment:
Q  57 ttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgct 156  Q
    ||||| |||||||| |||||||||||||||   || ||||| | |  ||||||||| | |||||| ||||||||||| || | ||||| |||||||||||    
T  2157877 ttgcttatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgct 2157778  T
Q  157 ataaacatgttt 168  Q
    |||| |||||||    
T  2157777 ataagcatgttt 2157766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 29755004 - 29754951
Alignment:
Q  107 tattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||| |||||||| ||||||||||| |||| |||||||||||||||||||||    
T  29755004 tattttcatatacccaattgtattgaaactttgattattaatgaaatgctataa 29754951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 36045005 - 36045069
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    |||||||| |||| ||||| |||||||||||| | ||||||||||||||||||||| ||| ||||    
T  36045005 tttattttcatatgcccgaatgtattgaatctcttattattaatgaaatgctataagcatatttc 36045069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 13948842 - 13948786
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||||| |||||||| ||||||||||| |||| ||||||| ||| |||||||||    
T  13948842 gtttattttcatataccctattgtattgaaactttgattattattgatatgctataa 13948786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 21092250 - 21092356
Alignment:
Q  60 ctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctata 159  Q
    |||||||||||  || ||| | ||| |||||| |||||  ||||||||||||| | |||||| ||||||||||| ||    |||||||||||||| ||||    
T  21092250 ctcatgctcttgtaatagaggtcacatctttagctagtcatgccgtttattttgaaatacccaattgtattgaaact---cttattaatgaaatgttata 21092346  T
Q  160 aacatgtttc 169  Q
    | ||||||||    
T  21092347 agcatgtttc 21092356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 27493351 - 27493392
Alignment:
Q  115 tatacccgattgtattgaatctttaattattaatgaaatgct 156  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
T  27493351 tatacccaattgtattgaatctttgattataaatgaaatgct 27493392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 3051011 - 3050951
Alignment:
Q  103 cgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaaca 163  Q
    |||||||||| || ||||  ||||||||||| |||| || |||||||| ||||||||||||    
T  3051011 cgtttattttcatctaccttattgtattgaaactttgatcattaatgatatgctataaaca 3050951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 16206578 - 16206690
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||| || |||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||    
T  16206578 gttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgc 16206677  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  16206678 tataagcatgttt 16206690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 23762564 - 23762495
Alignment:
Q  101 gccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    |||||||||| |||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||    
T  23762564 gccgtttattataatatacccgattgtattgaaactctgattatcaatgaaatgctataaacatgtttct 23762495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 44886334 - 44886447
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||| ||| |||||||||||||||  ||| ||| | |  |  |||||| | |||||||||| ||||||||||| |||||||| ||||||||||    
T  44886334 gttgctcatgcacttgcaagagaagccacgttcttagctaatcccactatttattatgatatacccgaatgtattgaatccttaattatcaatgaaatgc 44886433  T
Q  156 tataaacatgtttc 169  Q
    ||||||||||||||    
T  44886434 tataaacatgtttc 44886447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 23761440 - 23761362
Alignment:
Q  92 actagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    |||||| | |||||||||| | |||||||||||||||||||| || | ||||| ||||||||||||||| |||||||||    
T  23761440 actagtcccgccgtttattatgatatacccgattgtattgaaactctgattatcaatgaaatgctataagcatgtttct 23761362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 23789584 - 23789506
Alignment:
Q  92 actagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    |||||| | |||||||||| | |||||||||||||||||||| || | ||||| ||||||||||||||| |||||||||    
T  23789584 actagtcccgccgtttattatgatatacccgattgtattgaaactctgattatcaatgaaatgctataagcatgtttct 23789506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 23379944 - 23380020
Alignment:
Q  93 ctagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    ||||||| || ||||||||||| |||||| ||||||||||| || | ||||||||||||||| ||||| ||||||||    
T  23379944 ctagttccgctgtttattttaaaatacccaattgtattgaaactattattattaatgaaatgttataagcatgtttc 23380020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 20661232 - 20661345
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||||||  ||||||   || ||||| | || || |||| | | |||||| |||||||||||||||| ||||| ||||||||||    
T  20661232 gttgctcatgctcttgcaagagacaccacgttactagctagtcccgctgtctattatgacatacccaattgtattgaatctttgattatcaatgaaatgc 20661331  T
Q  156 tataaacatgtttc 169  Q
    ||||| || |||||    
T  20661332 tataagcaagtttc 20661345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 33650964 - 33651030
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    ||||||||||| |||||| || ||||||||| | | ||||||||||||||||| ||||||| |||||    
T  33650964 gtttattttaacatacccaatcgtattgaatatcttattattaatgaaatgctctaaacatatttct 33651030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 2973461 - 2973416
Alignment:
Q  115 tatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||| ||||||||||| |||| |||| ||||||||||||||||    
T  2973461 tatacccaattgtattgaaactttgattactaatgaaatgctataa 2973416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 11502361 - 11502398
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaac 93  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  11502361 gttgctcatactcttgcaagagaagccacgtctttaac 11502398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 11818544 - 11818431
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||||| |||| || ||||||||||||   || ||||| | |   |||||||| | |||||| ||| ||||||| || | ||||||||||||||||    
T  11818544 gttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttattttcagatacccaattatattgaacctcttattattaatgaaatgc 11818445  T
Q  156 tataaacatgtttc 169  Q
    ||||| ||| ||||    
T  11818444 tataagcatatttc 11818431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 11553415 - 11553479
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    |||||||| |||||||||| | ||||||| || | |||||||||||||| |||||| ||| ||||    
T  11553415 tttattttcatatacccgaatatattgaaactcttattattaatgaaatactataagcatatttc 11553479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 28172896 - 28172956
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacat 164  Q
    ||||||||| || |||||||||||||| | ||| |  |||||||| |||||||||||||||    
T  28172896 gtttattttgatgtacccgattgtattaactctattgttattaataaaatgctataaacat 28172956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 6006132 - 6006025
Alignment:
Q  60 ctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctata 159  Q
    ||||||||||| |||| ||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||    
T  6006132 ctcatgctcttgcaagggaagccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctata 6006033  T
Q  160 aacatgtt 167  Q
    | ||||||    
T  6006032 agcatgtt 6006025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 31973537 - 31973637
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| || |||| |||||||||||| ||||| | |||||||||| | |||||||| ||||||||||||||||||| |||||||||||||    
T  31973537 gttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatacccaattgtattgaatctttaatgattaatgaaatgc 31973636  T
Q  156 t 156  Q
    |    
T  31973637 t 31973637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 31935279 - 31935392
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| || |||| |||||||||||| ||||| | |||||||||| | |||||||| |||||||||||||||| || |||||||||||||    
T  31935279 gttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatacccaattgtattgaatctttgatgattaatgaaatgc 31935378  T
Q  156 tataaacatgtttc 169  Q
    | ||| || |||||    
T  31935379 tctaagcacgtttc 31935392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 17790191 - 17790303
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||| |||||| |||| || |||||||||||| |||||   ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||    
T  17790191 gttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgc 17790290  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  17790291 tataagcatgttt 17790303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 19098633 - 19098745
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||| |||||| |||| || |||||||||||| |||||   ||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||    
T  19098633 gttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgc 19098732  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  19098733 tataagcatgttt 19098745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 53394874 - 53394986
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||||||||||||||||||| |||||  ||| ||||||||| ||||  | |||| ||||||| || | ||||||||||||||||    
T  53394874 gttgctcatgctcttgcaagagaagccacgtctttagctagtcgtgcagtttattttgatat-tctgattatattgaaactcttattattaatgaaatgc 53394972  T
Q  156 tataaacatgtttc 169  Q
    ||||| ||||||||    
T  53394973 tataagcatgtttc 53394986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 31809204 - 31809314
Alignment:
Q  59 gctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctat 158  Q
    |||||| ||||| || |||| |||||||||||| ||||| | |||||||||| | ||||| || ||||||||||  || | || ||||||||||||||||    
T  31809204 gctcatcctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatatccaattgtattgagactattataattaatgaaatgctat 31809303  T
Q  159 aaacatgtttc 169  Q
    |||||||||||    
T  31809304 aaacatgtttc 31809314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 49499451 - 49499557
Alignment:
Q  58 tgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgcta 157  Q
    |||||||| |||| ||||||||||||||| | || |||||   |   |||||||||| ||| ||||||||||||||||| | ||||||||||||||||||    
T  49499451 tgctcatgttcttgcaagagaagccacgtttctagctagtctcgttatttattttaacatatccgattgtattgaatctcttattattaatgaaatgcta 49499550  T
Q  158 taaacat 164  Q
    |||||||    
T  49499551 taaacat 49499557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 53437576 - 53437689
Alignment:
Q  57 ttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgct 156  Q
    |||||||||||||| ||||||||||||| |||||| |||||  ||  ||||||||| |||| |  |||| ||||||| || | |||||||||||||||||    
T  53437576 ttgctcatgctcttgcaagagaagccacatctttagctagtcgtgtagtttattttgatattct-gattatattgaaactcttattattaatgaaatgct 53437674  T
Q  157 ataaacatgtttctc 171  Q
    |||| ||||||||||    
T  53437675 ataagcatgtttctc 53437689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 31661074 - 31660977
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaat 153  Q
    ||||||||||||||| || |||| | ||| | |||| ||||| | |||||||||| | |||||||| ||||||||||||||||||| |||||||||||    
T  31661074 gttgctcatgctcttgcacgagaggtcacttttttatctagtcccgccgtttattatgatatacccaattgtattgaatctttaatgattaatgaaat 31660977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 31228277 - 31228389
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||  || |||||||||||| ||| | | || |||||||||||||||  | ||||||||||| || | ||||| ||||||||||    
T  31228277 gttgctcatgctcttgcaatggaggccacgtctttagctaatcccgcagtttattttaatatattcaattgtattgaaactcttattataaatgaaatgc 31228376  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  31228377 tataagcatgttt 31228389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 49644509 - 49644621
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||| | ||| ||||||||| |||||  |||| |||| | ||  |||||| | |||||||||| ||||||||||| |||||||| ||||||||||    
T  49644509 gttgctcatacacttgcaagagaagtcacgttcttaattagtcccgctatttattatgatatacccgaatgtattgaatccttaattatcaatgaaatgc 49644608  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  49644609 tataagcatgttt 49644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 19603020 - 19602905
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||| ||||| |||||||||| |||| |||| ||||| |   | |||||||  ||||| ||||||||||| ||||| | ||||||||||||||||    
T  19603020 gttgctcatactcttgcaagagaagcgacgtttttagctagtcccagcatttatttcgatatatccgattgtatttaatctcttattattaatgaaatgc 19602921  T
Q  156 tataaacatgtttctc 171  Q
    ||||| ||||| ||||    
T  19602920 tataagcatgtctctc 19602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 18357148 - 18357260
Alignment:
Q  57 ttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgct 156  Q
    |||||||||||||| || ||||||||||||   || ||| ||| |  ||||||||| |||||||||| | |||||||||| | |||||| ||||||||||    
T  18357148 ttgctcatgctcttgcaggagaagccacgttactagctaattccgttgtttattttgatatacccgaatatattgaatctcttattattcatgaaatgct 18357247  T
Q  157 ataaacatgtttc 169  Q
    |||| ||| ||||    
T  18357248 ataagcatatttc 18357260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 16739530 - 16739419
Alignment:
Q  57 ttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgct 156  Q
    ||||| |||||||| |||||||||||||||   || ||||| | |  ||||||||| | |||||| ||||||||||| || | ||||| |||||||||||    
T  16739530 ttgctaatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgct 16739431  T
Q  157 ataaacatgttt 168  Q
    |||| |||||||    
T  16739430 ataagcatgttt 16739419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 29373053 - 29372949
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||| ||||||||| ||||||||| |||||   || ||||| | |  |||||||||||| ||||||| ||||||||| || | ||||| ||||||||||    
T  29373053 gttgcccatgctctttcaagagaagtcacgttactagctagtccggttgtttattttaatttacccgaatgtattgaaactcttattatcaatgaaatgc 29372954  T
Q  156 tataa 160  Q
    |||||    
T  29372953 tataa 29372949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 36144814 - 36144869
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||| |||||||||||||||||||| || |  ||||||||||||||||||||    
T  36144814 tttattttcatatacccgattgtattgaacctcttgttattaatgaaatgctataa 36144869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 8566056 - 8566166
Alignment:
Q  59 gctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctat 158  Q
    |||||||||||| || |||| |||||||||||| ||||| | || || |||| | |||||||| ||||||||||  || | || || |||||||||||||    
T  8566056 gctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgatatacccaattgtattgagactattatgatcaatgaaatgctat 8566155  T
Q  159 aaacatgtttc 169  Q
    || ||| ||||    
T  8566156 aagcatctttc 8566166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 35907017 - 35906929
Alignment:
Q  72 caagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||||||||||   || ||||| | || ||||||||| | |||||| ||||||||||| || | ||||| |||||||||||||||    
T  35907017 caagagaagccacgttactagctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgctataa 35906929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 12526622 - 12526575
Alignment:
Q  123 attgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    ||||||||||| || | ||||||||||||||||||||||||| |||||    
T  12526622 attgtattgaaactattattattaatgaaatgctataaacatctttct 12526575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 38015097 - 38015051
Alignment:
Q  123 attgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    |||||||||||||| | ||||| |||||||||||||||||| |||||    
T  38015097 attgtattgaatctcttattatcaatgaaatgctataaacaagtttc 38015051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 18342722 - 18342787
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    |||||||||||||||| ||| |||||  ||||| | |||||| |||||||||||||| ||| ||||    
T  18342722 gtttattttaatatactcgaatgtataaaatctcttattattcatgaaatgctataagcatatttc 18342787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 18765635 - 18765590
Alignment:
Q  115 tatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||| |||||||||||||||  ||||| |||||||||||||||    
T  18765635 tatacccaattgtattgaatcttctattataaatgaaatgctataa 18765590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 16890249 - 16890362
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||| |||||||| ||||| ||||| || |  |||||||||||||||    
T  16890249 gttgctcatgctcttgcaagagaagccacatctttaactagtaccgccgtttattttgatatacccaattgttttgaaactcttgttattaatgaaatgc 16890348  T
Q  156 tataaacatgtttc 169  Q
     |||| ||||||||    
T  16890349 aataagcatgtttc 16890362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 1493343 - 1493234
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| ||||||| |||||||||||| ||||| | |||||||||||  |||||||| ||| ||||||| || | ||||| ||||||||||    
T  1493343 gttgctcatgctcttgcaagagaggccacgtctttagctagtcccgccgtttatttcgatatacccaattatattgaaactattattatcaatgaaatgc 1493244  T
Q  156 tataaacatg 165  Q
    ||||| ||||    
T  1493243 tataagcatg 1493234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 34355845 - 34355730
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||||||| ||| ||   || ||||| | || ||||||||| |||||||| ||||||||||| || | ||||| ||||||||||    
T  34355845 gttgctcatgctcttgcaagagaaaccatgttactagctagtcccgctgtttattttgatatacccaattgtattgaaactcttattatcaatgaaatgc 34355746  T
Q  156 tataaacatgtttctc 171  Q
    ||||| ||||||||||    
T  34355745 tataagcatgtttctc 34355730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 9959266 - 9959370
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| || |||||  |||||||||| ||||| | |||||||||| | |||||||| ||||||||||  || | || |||||||||||||    
T  9959266 gttgctcatgctcttgcacgagaactcacgtctttagctagtcccgccgtttattatgatatacccaattgtattgagactattatgattaatgaaatgc 9959365  T
Q  156 tataa 160  Q
    |||||    
T  9959366 tataa 9959370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 10910972 - 10911026
Alignment:
Q  114 atatacccgattgtattgaatctttaattattaatgaaatgctataaacatgttt 168  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  10910972 atatacccgattgtattgaatctttaattatcaatgaaatgatataagcatgttt 10911026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 13768240 - 13768306
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||| ||| |||||    
T  13768240 gtttatttttatatacccgattgtattgaatctcttattattaatcaaatgctataagcatatttct 13768306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 30589014 - 30589112
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatg 154  Q
    ||||||||||||||| |||||||||||||||  ||| ||||||| |   |||||| | |||| || || ||||||||||| |||||||| |||||||||    
T  30589014 gttgctcatgctcttgcaagagaagccacgttcttagctagttccgttatttattatgatatgcctgaatgtattgaatccttaattatcaatgaaatg 30589112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 30140988 - 30140935
Alignment:
Q  107 tattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||| |||||||| ||||||||||| |||| |||||||||||||||||||||    
T  30140988 tattttcatatacccaattgtattgaaactttgattattaatgaaatgctataa 30140935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 22736573 - 22736528
Alignment:
Q  115 tatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||||    
T  22736573 tatacccaattgtattgaatcttcaattataaatgaaatgctataa 22736528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 13825560 - 13825624
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    |||||| | |||||| ||| ||||||||||  |||||||| ||||||||||||||| ||||||||    
T  13825560 tttattatgatatactcgaatgtattgaattcttaattatcaatgaaatgctataagcatgtttc 13825624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 16416689 - 16416748
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacat 164  Q
    |||||||| |||||||| ||||||||||| || | ||||||||||||||| || ||||||    
T  16416689 tttattttcatatacccaattgtattgaacctcttattattaatgaaatgttacaaacat 16416748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 187123 - 187173
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||||| ||| || |||||||||||||| | ||||||||||||||||    
T  187123 tttattttaacatatccaattgtattgaatctcttattattaatgaaatgc 187173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 17752307 - 17752262
Alignment:
Q  115 tatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||| |||||||||||||||  ||||| |||||||||||||||    
T  17752307 tatacccaattgtattgaatcttcgattataaatgaaatgctataa 17752262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 15299978 - 15299934
Alignment:
Q  124 ttgtattgaatctttaattattaatgaaatgctataaacatgttt 168  Q
    ||||||||||  ||||||||||||||||||| ||||| |||||||    
T  15299978 ttgtattgaacatttaattattaatgaaatgttataagcatgttt 15299934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 30033621 - 30033733
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||| || |||||||||||| ||||| | ||||||||||||||||||||| ||| ||||||| || | ||||| ||||||||||    
T  30033621 gttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattatattgaaactcttattataaatgaaatgc 30033720  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  30033721 tataagcatgttt 30033733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 21701574 - 21701461
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| || |||| |||||||||||| ||||| | |||||||||| | |||||| | ||||||||||| || | || |||||||||||||    
T  21701574 gttgctcatgctctttcacgagaggccacgtctttagctagtcccgccgtttattatgatatactcaattgtattgaaactcttatgattaatgaaatgc 21701475  T
Q  156 tataaacatgtttc 169  Q
    ||||| || |||||    
T  21701474 tataagcacgtttc 21701461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 24083414 - 24083529
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttatttta--atatacccgattgtattgaatctttaattattaatgaaat 153  Q
    ||||||||||| ||| |||||||||||||||  ||| ||||| | ||  |||||| ||  ||||||| || ||||||||||| |||||||||||||||||    
T  24083414 gttgctcatgcacttgcaagagaagccacgttcttagctagtcccgctatttattatatgatataccagaatgtattgaatccttaattattaatgaaat 24083513  T
Q  154 gctataaacatgtttc 169  Q
    ||||||| ||||||||    
T  24083514 gctataagcatgtttc 24083529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 41117228 - 41117340
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||||||| |||||||||||||||   || ||||| |  ||||||||||| | |||||| |||||||| || || | ||||| ||||||||||    
T  41117228 gttgctcatgctcttgcaagagaagccacgttactagctagtcccaccgtttattttgagatacccaattgtattcaaactattattatcaatgaaatgc 41117327  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  41117328 tataagcatgttt 41117340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 9361806 - 9361918
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||| ||| |||||||||||||||  |||||||||   ||  |||||| | ||||||| || |||| |||||| |||||||| ||||||||||    
T  9361806 gttgctcatgcacttgcaagagaagccacgttcttaactagtctcgctatttattatgatatacctgaatgtactgaatccttaattatcaatgaaatgc 9361905  T
Q  156 tataaacatgttt 168  Q
    || || |||||||    
T  9361906 tagaagcatgttt 9361918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 24065252 - 24065364
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||||| |||| || ||||||||||||   || ||||| | |  ||||||||| | ||||||||||||||||||  | | ||||||||||||||||    
T  24065252 gttgctcatgttcttgcaggagaagccacgttactagctagtcccgttgtttattttcacatacccgattgtattgaacttcttattattaatgaaatgc 24065351  T
Q  156 tataaacatgttt 168  Q
    ||||| |||||||    
T  24065352 tataagcatgttt 24065364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 49702512 - 49702572
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacat 164  Q
    ||||||||||||||||| |||||||||||| || | ||||||||||| |||||||||||||    
T  49702512 gtttattttaatataccagattgtattgaacctcttattattaatgagatgctataaacat 49702572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 4614949 - 4615043
Alignment:
Q  76 agaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    ||||||||||| | |||||||||| |  ||| ||||||| ||| |||||||||||||||||   ||||||||||||||  ||||||||| |||||    
T  4614949 agaagccacgtttctaactagttccgttgttgattttaacataaccgattgtattgaatctcgtattattaatgaaattttataaacatatttct 4615043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 47726351 - 47726409
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaaca 163  Q
    |||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||||||    
T  47726351 tttattttcatatacccaattgtattgaaactttgattactaatgaaatgctataaaca 47726409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 47747657 - 47747715
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaaca 163  Q
    |||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||||||    
T  47747657 tttattttcatatacccaattgtattgaaactttgattactaatgaaatgctataaaca 47747715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 3603574 - 3603514
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacat 164  Q
    ||||||||| |||||| ||||||||||||| || | ||||||||||||||| |||||||||    
T  3603574 gtttattttcatatacacgattgtattgaacctcttattattaatgaaatgttataaacat 3603514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 49372357 - 49372470
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    ||||||||||| ||| ||||| |||||||||   || ||||| |  | ||||||| ||| |||||| ||||||||||| || | ||||| ||||||||||    
T  49372357 gttgctcatgcacttgcaagaaaagccacgttaatatctagtcccactgtttattataaaatacccaattgtattgaaactcttattatcaatgaaatgc 49372456  T
Q  156 tataaacatgtttc 169  Q
    ||||| || |||||    
T  49372457 tataagcaagtttc 49372470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 6507964 - 6507908
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||||||||||||| | ||||||||| || | ||||||||||||||| |||||    
T  6507964 gtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataa 6507908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 34696156 - 34696100
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||||| |||||||| ||||||||||| |||| ||||||||||| ||| |||||    
T  34696156 gtttattttcatataccccattgtattgaaactttgattattaatgatatgatataa 34696100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 13288225 - 13288268
Alignment:
Q  127 tattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    |||||||||| | ||||||||||||||||||||||||| |||||    
T  13288225 tattgaatctcttattattaatgaaatgctataaacatatttct 13288268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 16678796 - 16678741
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||| |||||||| |||| |||||| |||| |||| ||||||||||||||||    
T  16678796 tttattttcatatacccaattggattgaaactttgattactaatgaaatgctataa 16678741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 2002588 - 2002531
Alignment:
Q  106 ttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaaca 163  Q
    |||||||| ||||||   |||||||||| |||| ||||||||||| ||||||||||||    
T  2002588 ttattttattatacctagttgtattgaaactttgattattaatgagatgctataaaca 2002531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 18122822 - 18122867
Alignment:
Q  115 tatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    ||||||| ||| ||||||||||| |||||| |||||||||||||||    
T  18122822 tatacccaattatattgaatcttcaattataaatgaaatgctataa 18122867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 29115498 - 29115563
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    ||||||||| |||||||||||||||| ||| || | |||||||||| |||| ||||| ||| ||||    
T  29115498 gtttattttcatatacccgattgtatggaacctcttattattaatgcaatgatataagcatatttc 29115563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 5185324 - 5185260
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttc 169  Q
    |||||||| |||||||||| | |||||||| | | ||||||||||||||| ||||| ||| ||||    
T  5185324 tttatttttatatacccgaatatattgaatatcttattattaatgaaatgttataagcatatttc 5185260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 62565 - 62477
Alignment:
Q  80 gccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgttt 168  Q
    ||||| |||||| ||||| | || |||||||||||||||| | ||||||||||| || | ||||||||||||||||||||| |||||||    
T  62565 gccacttctttagctagtcccgctgtttattttaatatactcaattgtattgaaactcttattattaatgaaatgctataagcatgttt 62477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 44564 - 44620
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||||||||||||||||||||||||| || | |||||||||||||| ||||||    
T  44564 gtttattttaatatacccgattgtattgaacctcttattattaatgaaattctataa 44620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 1136 - 1191
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||| |||||||| |||||||||||| ||| |||||||||||||||||||||    
T  1136 tttattttcatatacccaattgtattgaatgtttgattattaatgaaatgctataa 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 1989 - 1933
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||||||||||||| | ||||||||| || | ||||||||||||||| |||||    
T  1989 gtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataa 1933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 9645 - 9589
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataa 160  Q
    |||||||||||||||||| | ||||||||| || | ||||||||||||||| |||||    
T  9645 gtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataa 9589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 73391 - 73332
Alignment:
Q  104 gtttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaaca 163  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||| ||| ||||||||    
T  73391 gtttacttttatatacccaattgtattgaaactttgattattaatgatatgttataaaca 73332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 4317 - 4204
Alignment:
Q  56 gttgctcatgctcttacaagagaagccacgtctttaactagttctgccgtttattttaatatacccgattgtattgaatctttaattattaatgaaatgc 155  Q
    |||||||||||| || || || | ||||| |||||| ||||| | ||| |||| | | ||||||||  |||||||||| || | ||||| ||||||||||    
T  4317 gttgctcatgctattgcacgaaaggccacatctttagctagtcccgccatttaatatgatatacccacttgtattgaaactattattatcaatgaaatgc 4218  T
Q  156 tataaacatgtttc 169  Q
    ||||| || |||||    
T  4217 tataagcacgtttc 4204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 21874 - 21809
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaatgctataaacatgtttct 170  Q
    |||||||| |||| ||| |||||||||||||| | ||||| ||||||||| ||||| ||| |||||    
T  21874 tttatttttatatccccaattgtattgaatctcttattataaatgaaatgttataagcatctttct 21809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 355 - 307
Alignment:
Q  105 tttattttaatatacccgattgtattgaatctttaattattaatgaaat 153  Q
    |||||||| |||||||| ||||||||||| |||| |||| |||||||||    
T  355 tttattttcatatacccaattgtattgaagctttgattactaatgaaat 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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