View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_176 (Length: 291)
Name: NF1111_low_176
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_176 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 58 - 251
Target Start/End: Complemental strand, 37894384 - 37894191
Alignment:
| Q |
58 |
ttaaacacgtgtatgttgtcaatttgccgtaaaaacaaacatgttataaatcatagtttaagcagttattacacatgccgataataattagaaacataaa |
157 |
Q |
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| T |
37894384 |
ttaaacgcgtgtatgttgtcaatttgcggtaaaaacaaacatgctataaatcatagtttaagcagttattacacatgcagataataattagaaacataaa |
37894285 |
T |
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| Q |
158 |
cattctttattcttatacaattattacacatgcagataattcttgtatcaataccgtacttattgacatcataacacaattgagttgtaattaa |
251 |
Q |
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| T |
37894284 |
cattctttattcttatacaattattacacatgctgataattcttctatcaataccgtacttattgacatcataacacaattgagttgtaattaa |
37894191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 37189400 - 37189291
Alignment:
| Q |
141 |
ataattagaaacat-aaacattctttattcttatacaattattacacatgcagataattcttgtatcaataccgtacttattgacatcataacacaattg |
239 |
Q |
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|||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37189400 |
ataattagaaaccttaaacattctttattcgtata--attattacacatgcagataattcttgtatcaataccgtacttattgacatgataacacaattg |
37189303 |
T |
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| Q |
240 |
agttgtaattaa |
251 |
Q |
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||||| |||||| |
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| T |
37189302 |
agttgaaattaa |
37189291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 37894425 - 37894385
Alignment:
| Q |
54 |
tactttaaacacgtgtatgttgtcaatttgccgtaaaaaca |
94 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
37894425 |
tactttaaacgcgtgtatgttgtcaatttgccgtaaaaaca |
37894385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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