View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_18 (Length: 515)
Name: NF1111_low_18
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_18 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 25900070 - 25899552
Alignment:
| Q |
1 |
aaaaaatcatctatgtctctcacttgcacaacttattgatggtatttggtgcattatcgttgattctaacggctttgagaacagaaactgttcttaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25900070 |
aaaaaatcatctatgtctctcacttgcacaacttattgatggtatttggtgcattatcgttgattctaacggctttgagaacagaaactgttcttaaaat |
25899971 |
T |
|
| Q |
101 |
aagaatcagaaaggtttatggttaaaaaatcattatcaaatacaa-agcaatgt---acagagaaatttattgaatacattttgcaggtatttgctcgaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25899970 |
aagaatcagaaaggtttatggttaaaaaatcattatcaaatacaagagcaatgtctcagagagaaatttattgaatacattttgcaggtatttgctcgaa |
25899871 |
T |
|
| Q |
197 |
tgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctgtattttggcgcaatgcatgcttgaagggttg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25899870 |
tgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctgtactttggcgcaatgcatgcttgaagggttg |
25899771 |
T |
|
| Q |
297 |
gcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacggagcctttttatgaagctctctggagcggttg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
25899770 |
gcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacggagccttcttatgaagctctctgaagcggttg |
25899671 |
T |
|
| Q |
397 |
aaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttatggccaaggttgcgatttgacggtaagcacagctatctctt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
25899670 |
aaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgatggtaagcacaactatctctt |
25899571 |
T |
|
| Q |
497 |
atttcatagccttatttcc |
515 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
25899570 |
attgcatagccttatttcc |
25899552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 166 - 515
Target Start/End: Original strand, 40068361 - 40068710
Alignment:
| Q |
166 |
attgaatacattttgcaggtatttgctcgaatgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctg |
265 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || || || || ||||||||||||| ||||| |||||||||| |
|
|
| T |
40068361 |
attgaaaacattttgcaggtctttgctcgaatgactccatatgatatgggaaaagcatcgtgcgtatgtcgaaaatggcggtacacaatccgtaaccctg |
40068460 |
T |
|
| Q |
266 |
tattttggcgcaatgcatgcttgaagggttggcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacgg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || || |
|
|
| T |
40068461 |
cattttggcgcaatgcatgcttgaagggttggcaggtaatgtcattggaggtttagaatatggatcttttactgcttataagtctaatttctgattatgg |
40068560 |
T |
|
| Q |
366 |
agcctttttatgaagctctctggagcggttgaaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttatggccaaggt |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40068561 |
agcctttttatgaagctctctggagcggttgaaaactataaaatacttcaatcaaaatacgatggctcatggcggaaaatgtggctcttacggccaaggt |
40068660 |
T |
|
| Q |
466 |
tgcgatttgacggtaagcacagctatctcttatttcatagccttatttcc |
515 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40068661 |
tgcgatttgatggtaagcacagctatctcttatttcataaccttatttcc |
40068710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 40068163 - 40068242
Alignment:
| Q |
32 |
cttattgatggtatttggtgcattatcgttgattctaacggctttgagaacagaaactgttcttaaaataagaatcagaa |
111 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| ||| ||| ||||||||||||||||||||||| || ||| ||| ||||| |
|
|
| T |
40068163 |
cttattgactgtatttggtgctttattgttggttccaacagctttgagaacagaaactgttctcaacataggaaccagaa |
40068242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 156 - 446
Target Start/End: Original strand, 41099456 - 41099749
Alignment:
| Q |
156 |
agagaaatttattgaatacattttgcaggtatttgctcgaatgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaatt |
255 |
Q |
| |
|
||||| |||||||||||||| |||||| ||||||||| ||||||||||||||||| || |||||||||||||||| | | ||||||| |||||| |||| |
|
|
| T |
41099456 |
agagagatttattgaatacactttgcaagtatttgctagaatgactccatatgatgaggaaaaagcctcttgtgtgtg-tcaaaatggtggtataaaatt |
41099554 |
T |
|
| Q |
256 |
cgtaaccctgtattttggcgcaatgcatgcttgaagggttggcaggtaatgtca--ttggaggttttgaatatggatcttctactgcttataagtc--ta |
351 |
Q |
| |
|
| ||| |||||||||| | | ||||||||||||||||||||||| || | |||| |||| |||||||| || || ||| ||||||||||||||| || |
|
|
| T |
41099555 |
cataagcctgtattttcgtggaatgcatgcttgaagggttggcaagtgaggtcaatatggacgttttgaaaatagaacttttactgcttataagtctata |
41099654 |
T |
|
| Q |
352 |
atttctgactacggagcctttttatgaagctctctggagcggttgaaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatg |
446 |
Q |
| |
|
|| ||| | || |||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||| || |||| |||| ||||||| |
|
|
| T |
41099655 |
atatcttattatggagccttttcatgaagcactctagagtggttgaaaactataagatacttcaatcaaaatatgatggctagtggcagaaaatg |
41099749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University