View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_180 (Length: 286)
Name: NF1111_low_180
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_180 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 46 - 240
Target Start/End: Original strand, 24463609 - 24463805
Alignment:
| Q |
46 |
cagaacctgtgaatatgggggagaaataaacattaggacacata--aaataaaaaacacaagtaataattacgttttccaaatcatagcacaatatgttt |
143 |
Q |
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| T |
24463609 |
cagaatctgtgaatatgggggagaaataaacattaggacacatataaaataaaaaacacaagtaataattacgttttccaaatcatagcacaatatgttt |
24463708 |
T |
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| Q |
144 |
cgtctacataaaagctacctcaagctgctcttcagtgaataactctttctgaacattccatgtgtcagcatgggtccgccggaattctgcaacagct |
240 |
Q |
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| T |
24463709 |
cgtctacataaaagctacctcaagctgctcttcagtgaataactctttctgaacattccatgtgtcagcatgggtccgccggaattctgcaacagct |
24463805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 46 - 240
Target Start/End: Original strand, 24438379 - 24438576
Alignment:
| Q |
46 |
cagaacctgtgaatatgggggagaaataaacattaggacacata--aaataaaaaacacaagtaataattacgttttccaaatcatagcacaatatgttt |
143 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
24438379 |
cagaatctgtgaatatgggggaaaaataaacattaggacacatataaaataaaaaacacaagtaataattaggttttccaaatcatagcacaatacgttt |
24438478 |
T |
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| Q |
144 |
cgtctacata-aaagctacctcaagctgctcttcagtgaataactctttctgaacattccatgtgtcagcatgggtccgccggaattctgcaacagct |
240 |
Q |
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|||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24438479 |
cgtctacatagaaagctacctcaagttgctctttagtgaataactctttctgaacattccatgtgtcagcatgggtccgccggaattctgcaacagct |
24438576 |
T |
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