View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_184 (Length: 284)
Name: NF1111_low_184
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_184 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28887043 - 28887236
Alignment:
| Q |
1 |
attttcctgaaaatctctacaaaataacttgttcattttatttttaaatattcgtcggttcaaaatgcataaaaataaataaattatagttcccctacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
28887043 |
attttcctgaaaatctctacaaaataaattgttcattttatttttaaatattcgtcggttcaaaatgcataaaaaaaaa---attatagttcccctacaa |
28887139 |
T |
|
| Q |
101 |
tctgaaaaactcaattttccttttctttaaaatcctgagccgacttcttacaagattcttcaatctcaccaaattcccatcaaagaagagagaatgt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28887140 |
tctgaaaaactcaattttccttttctttaaaatcctgagctgacttcttacaagattcttcaatctcaccaaattcccatcaaagaagagagaatgt |
28887236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 32144485 - 32144410
Alignment:
| Q |
99 |
aatctgaaaaactcaattttccttttctttaaaatcctgagccgacttcttacaagattcttcaatctcaccaaatt |
175 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |||| | |||||||||||| |||||||||||||| |||||| |
|
|
| T |
32144485 |
aatctgaaaaactcaaatttccttttctataaa-tccttacttgacttcttacaatattcttcaatctcatcaaatt |
32144410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University