View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_185 (Length: 283)

Name: NF1111_low_185
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_185
NF1111_low_185
[»] chr8 (1 HSPs)
chr8 (46-240)||(36881413-36881607)
[»] chr5 (5 HSPs)
chr5 (46-135)||(41377823-41377912)
chr5 (47-133)||(15400879-15400965)
chr5 (46-133)||(15402488-15402575)
chr5 (54-132)||(14284385-14284463)
chr5 (46-134)||(43281137-43281225)
[»] chr2 (1 HSPs)
chr2 (54-127)||(42975817-42975890)
[»] chr1 (2 HSPs)
chr1 (46-135)||(50204521-50204610)
chr1 (55-135)||(43866281-43866361)
[»] chr7 (3 HSPs)
chr7 (54-119)||(32368128-32368193)
chr7 (54-135)||(19781095-19781176)
chr7 (47-135)||(23636691-23636779)
[»] scaffold0768 (1 HSPs)
scaffold0768 (71-115)||(4288-4332)
[»] chr4 (1 HSPs)
chr4 (63-135)||(55911183-55911254)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 36881607 - 36881413
Alignment:
Q  46 gaacctgtgtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaatgattgtgacgc 145  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881607 gaacctgagtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaatgattgtgacgc 36881508  T
Q  146 ttacagtttatcacgcaagccgtgcccattctgttacaccttggaacccctgatcctatacatcccttctgttctccagtagcgcacaccttcat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881507 ttacagtttatcacgcaagccgtgcccattctgttacaccttggaacccctgatcctatacatcccttctgttctccagtagcgcacaccttcat 36881413  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 41377823 - 41377912
Alignment:
Q  46 gaacctgtgtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaatg 135  Q
    ||||||| ||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||| ||| ||||||| |||||||    
T  41377823 gaacctgagtaaagtcgaagcacgattgaggtgccgtgggaagtaggatcgtacgatcctacaaaccagctctcaatcctgactacaatg 41377912  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 15400879 - 15400965
Alignment:
Q  47 aacctgtgtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaa 133  Q
    |||||| ||||||| |||| || |||||||||||  |||||||||||||| ||| |||||| ||||||||||| || |||| |||||    
T  15400879 aacctgagtaaagtcgaagtacgattgaggtgccgcgggacgtaggatcgtacggtcctacgaaccagcactcgattctgattacaa 15400965  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 15402488 - 15402575
Alignment:
Q  46 gaacctgtgtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaa 133  Q
    ||||||| ||||||| |||| || |||||| |||| |||||| ||||| || || ||||||| ||||||||||| ||||||| |||||    
T  15402488 gaacctgagtaaagtcgaagtacgattgagatgccatgggacataggaccgtacaatcctacgaaccagcactcgatcctgactacaa 15402575  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 14284385 - 14284463
Alignment:
Q  54 gtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaataca 132  Q
    |||||||  |||||| ||| ||||||| |||||||| |||||| ||||||||||||||||  |||| ||||||| ||||    
T  14284385 gtaaagtcaaagcacgattaaggtgccgtgggacgtgggatcgtacgatcctacaaaccattactcgatcctgagtaca 14284463  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 43281137 - 43281225
Alignment:
Q  46 gaacctgtgtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaat 134  Q
    ||||||| ||||||| ||||||  ||||||||||| ||||| |||| |||| |||||||||  |||||||||   ||||||| ||||||    
T  43281137 gaacctgagtaaagtcgaagcatgattgaggtgccgtgggatgtagaatcgtacgatcctatgaaccagcacgagatcctgactacaat 43281225  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 42975817 - 42975890
Alignment:
Q  54 gtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctga 127  Q
    |||||||||||| || |||||| |||| ||||||||||||||| |||||||||| |||||| ||||||||||||    
T  42975817 gtaaagttgaagtacgattgagatgccgtgggacgtaggatcgtacgatcctacgaaccagaactctatcctga 42975890  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 50204610 - 50204521
Alignment:
Q  46 gaacctgtgtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaatg 135  Q
    ||||||| ||||||| ||||||| ||||||||||  ||| ||||||||||  |||||||||| ||||||||||| ||||||| |||||||    
T  50204610 gaacctgagtaaagtcgaagcacgattgaggtgctgtggaacgtaggatcatacgatcctacgaaccagcactcgatcctgactacaatg 50204521  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 43866361 - 43866281
Alignment:
Q  55 taaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaatg 135  Q
    |||||| |||||||| ||||||||   |||| | |||||||| | |||||||| ||||||||||| ||||||| |||||||    
T  43866361 taaagtcgaagcacagttgaggtgttgtgggccataggatcgtaagatcctacgaaccagcactcgatcctgactacaatg 43866281  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 32368193 - 32368128
Alignment:
Q  54 gtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactc 119  Q
    ||||||| |||||||| ||||| |||| ||||||||||| ||| |||||||||| |||||||||||    
T  32368193 gtaaagtcgaagcacagttgagatgccgtgggacgtagggtcgtacgatcctacgaaccagcactc 32368128  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 19781095 - 19781176
Alignment:
Q  54 gtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaatg 135  Q
    ||||||| | ||||||||||||||| | | ||| ||||||||| || || ||||||||||||||||  |||||| |||||||    
T  19781095 gtaaagtcggagcacaattgaggtgtcgttggatgtaggatcgtactattctacaaaccagcactcgttcctgactacaatg 19781176  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 23636779 - 23636691
Alignment:
Q  47 aacctgtgtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaatg 135  Q
    |||||| ||||||| ||||||| ||||||||||| | ||||||   || | |||| ||||| ||||||||||| ||||||| |||||||    
T  23636779 aacctgggtaaagtcgaagcacgattgaggtgccgttggacgtcaaattgtacgaacctacgaaccagcactcgatcctgactacaatg 23636691  T

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Target: scaffold0768 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 4332 - 4288
Alignment:
Q  71 ttgaggtgccttgggacgtaggatcgaacgatcctacaaaccagc 115  Q
    |||||||||| ||||||||||||||| |||| |||| ||||||||    
T  4332 ttgaggtgccgtgggacgtaggatcgtacgaccctataaaccagc 4288  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 55911254 - 55911183
Alignment:
Q  63 aagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaatacaatg 135  Q
    |||||| ||||||||||| ||| | ||||||||| | |||||||| ||||||||||| ||| ||| |||||||    
T  55911254 aagcacgattgaggtgccgtgg-atgtaggatcgtatgatcctacgaaccagcactcgatcttgactacaatg 55911183  T

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