View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_189 (Length: 277)
Name: NF1111_low_189
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_189 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 4974477 - 4974681
Alignment:
| Q |
39 |
gatccaagtctgcaatcattcaaggacaatgaacttgatgtaatttgtgaagtgattcaagggtgcatccaacctgatccaaagatgagacctacaatga |
138 |
Q |
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| T |
4974477 |
gatccaagtctgcaatcattaaaggacaatgaacttgatgtaatttgtgaagtgattcaagggtgcatccaacctgatccaaagatgagacctacaatga |
4974576 |
T |
|
| Q |
139 |
gagacataacttccagattaagggaagtgctttgtgtaacacctgagcaagctgttccaagactctcaccactatggtgggctgaacttgagatattatc |
238 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4974577 |
gagacataacttccagattaagggaagtgttttgtgtaacacctgagcaagctgttccaagactctcaccactatggtgggctgaacttgagatattatc |
4974676 |
T |
|
| Q |
239 |
tgtgg |
243 |
Q |
| |
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||||| |
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| T |
4974677 |
tgtgg |
4974681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 4992385 - 4992589
Alignment:
| Q |
39 |
gatccaagtctgcaatcattcaaggacaatgaacttgatgtaatttgtgaagtgattcaagggtgcatccaacctgatccaaagatgagacctacaatga |
138 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4992385 |
gatccaagtctgcaatcattaaaggacaatgaacttgatgtaatttgtgaagtgattcaagggtgcatccaacctgatccaaagatgagacctacaatga |
4992484 |
T |
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| Q |
139 |
gagacataacttccagattaagggaagtgctttgtgtaacacctgagcaagctgttccaagactctcaccactatggtgggctgaacttgagatattatc |
238 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4992485 |
gagacataacttccagattaagggaagtgttttgtgtaacacctgagcaagctgttccaagactctcaccactatggtgggctgaacttgagatattatc |
4992584 |
T |
|
| Q |
239 |
tgtgg |
243 |
Q |
| |
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||||| |
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| T |
4992585 |
tgtgg |
4992589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 35831314 - 35831241
Alignment:
| Q |
159 |
agggaagtgctttgtgtaacacctgagcaagctgttccaagactctcaccactatggtgggctgaacttgagat |
232 |
Q |
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||||||||||||| | || ||||||| ||||| || |||||||| || ||||| |||||||||||||| ||||| |
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| T |
35831314 |
agggaagtgctttctatatcacctgatcaagcagtaccaagactttctccactctggtgggctgaactcgagat |
35831241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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