View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_19 (Length: 514)
Name: NF1111_low_19
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 109 - 507
Target Start/End: Original strand, 39299908 - 39300306
Alignment:
| Q |
109 |
agaacttcccatgcctgtcataccccggtcaattggataaagctccaatggtacaaaaatcttgttcatacgtacacaaggattctgtaaatgacttgcc |
208 |
Q |
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| T |
39299908 |
agaacttcccatgcctgtcataccccggtcaattggataaagctccaatggtacaaaaatcttgttcatacgtacacaaggattctgtaaatgacttgcc |
39300007 |
T |
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| Q |
209 |
aatcatgagagaatatttgatgggacatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataaaatgaaatgac |
308 |
Q |
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| T |
39300008 |
aatcatgagagaatatttgatgggacatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataaaatgaaatgac |
39300107 |
T |
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| Q |
309 |
ttgccaatcacgagaatattgattttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggacttcaaaatttg |
408 |
Q |
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| T |
39300108 |
ttgccagtcacgagaatattgattttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggacttcaaaatttg |
39300207 |
T |
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| Q |
409 |
tatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
507 |
Q |
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| T |
39300208 |
tatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
39300306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 406 - 507
Target Start/End: Original strand, 39247896 - 39247997
Alignment:
| Q |
406 |
ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataat |
505 |
Q |
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| T |
39247896 |
ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataat |
39247995 |
T |
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| Q |
506 |
ct |
507 |
Q |
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|| |
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| T |
39247996 |
ct |
39247997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 39262263 - 39262343
Alignment:
| Q |
28 |
caagaactgcctatatggtgtgtttgttgagtgagacatgaacaaggggacaagttgagtgagcaagaccgatacaagctt |
108 |
Q |
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| T |
39262263 |
caagaactgcccatatggtgtgtttgttgagtgagacatgaacaaggggacaagttgagtgagcaagaccgatacaagctt |
39262343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 413 - 507
Target Start/End: Original strand, 39196652 - 39196746
Alignment:
| Q |
413 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
507 |
Q |
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| T |
39196652 |
tacctactatgaaggagcaagctttccatcgtccagtttttgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39196746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 507
Target Start/End: Original strand, 39218224 - 39218318
Alignment:
| Q |
413 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
507 |
Q |
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| T |
39218224 |
tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39218318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 507
Target Start/End: Original strand, 39225322 - 39225416
Alignment:
| Q |
413 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
507 |
Q |
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| T |
39225322 |
tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39225416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 413 - 507
Target Start/End: Original strand, 39179407 - 39179501
Alignment:
| Q |
413 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
507 |
Q |
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| T |
39179407 |
tacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcctgagtgtaatct |
39179501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 39240973 - 39241035
Alignment:
| Q |
413 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctt |
475 |
Q |
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||||||| | ||||||||||||| ||||| |||| || |||||||||||||||||||| |||| |
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| T |
39240973 |
tacctacaaggaaggaacaagctttccatgttccagtctttgatcttaaaactggtctgcctt |
39241035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 39258403 - 39258465
Alignment:
| Q |
413 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctt |
475 |
Q |
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|||||||||| || || |||||| |||||||||| || |||||||||||||| ||| |||||| |
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| T |
39258403 |
tacctactataaaagagcaagctttccatcttccggtctttgatcttaaaaccggtttacctt |
39258465 |
T |
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