View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_191 (Length: 277)
Name: NF1111_low_191
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_191 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 32 - 221
Target Start/End: Original strand, 6134411 - 6134600
Alignment:
| Q |
32 |
agtgagatgaagagtcatatttgatgaaaatggacgttgagctacatataagtgagatgatattgtatatccaatatcttaaatttttggataaagatgt |
131 |
Q |
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| T |
6134411 |
agtgtgatgaagagtcatatttgatgaaaatggatgttgagctacatataagtgagatgatattgtatattcaatatcttaaatttttggataaagatgt |
6134510 |
T |
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| Q |
132 |
agcaatgaaaccacttttgtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgatgat |
221 |
Q |
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| T |
6134511 |
agtaatgaaaccacttgtgtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgatgat |
6134600 |
T |
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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 6121497 - 6121684
Alignment:
| Q |
32 |
agtgagatgaagagtcatatttgatgaaaatggacgttgagctacatataagtgagatgatattgtatatccaatatcttaaa-tttttggataaagatg |
130 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||| ||||| ||| ||| ||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
6121497 |
agtgtgatgaagagtcatatttcatgaaaatggatgttgagcaacatacaagcaagaagatgttgtatatccaatatcttaaattttttggataaagatt |
6121596 |
T |
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| Q |
131 |
tagcaatgaaaccacttttgtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgat |
218 |
Q |
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| T |
6121597 |
tattgatgaaaccacttgtgtggttgtttacattctaatatggtgatcagaactcccctcataatccaatggttgtattagattcgat |
6121684 |
T |
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