View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_192 (Length: 275)
Name: NF1111_low_192
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_192 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 25229209 - 25229379
Alignment:
| Q |
74 |
ttgaaattccaaagattagaagcaggtgagaatggacttcataataggatattcagaaaagcaacagaaggaaagatgactgaaacataaccaaatgtgt |
173 |
Q |
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| T |
25229209 |
ttgaaattccaaagattagaagcaaatcagaatggacttcagaataggagattcagaaaagcaagataaggaaagatgattgaaacataaccaaaggtgt |
25229308 |
T |
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| Q |
174 |
acaagaagatcagaagcaaaaatcataagctgataaccaaagcacaacgac--tagtttcaagatattctt |
242 |
Q |
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| T |
25229309 |
acaagaagatcagaagcaaaaatcataagctgataaccaaagcacaacgactatagtttcaagattttctt |
25229379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 21414563 - 21414657
Alignment:
| Q |
141 |
aaggaaagatgactgaaacataaccaaatgtgtacaagaagatcagaagcaaaaatcataagctgataaccaaagcacaacgactagtttcaaga |
235 |
Q |
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| T |
21414563 |
aaggaatgacgacagaaacataaccaaagttgcacaagaaagtctgaagtaaaaataagaagctgagaagcaatgcacaacgactagttttaaga |
21414657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 242
Target Start/End: Complemental strand, 18737716 - 18737548
Alignment:
| Q |
74 |
ttgaaattccaaagattagaagcaggtgagaatggacttcataataggatattcagaaaagcaacagaaggaaagatgactgaaacataaccaaatgtgt |
173 |
Q |
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|||||| ||||||| | |||||||||| |||| || |||||||| ||| ||||| |||| | || |||||| ||||| |||||| ||||||| ||| |
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| T |
18737716 |
ttgaaaatccaaagttcagaagcaggtcagaaaagaattcataatcggaaattcataaaaaaatcaaaaggaatgatgatagaaacacaaccaaaggtgc |
18737617 |
T |
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| Q |
174 |
acaagaagatcagaagcaaaaatcataagctgataaccaaagcacaacgactagtttcaagatattctt |
242 |
Q |
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|||| |||||||||||| || |||| ||| ||| || || |||||||| |||||||||| | |||||| |
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| T |
18737616 |
acaataagatcagaagccaagatcaaaagttgagaagcattgcacaacggctagtttcaaaacattctt |
18737548 |
T |
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