View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_195 (Length: 275)
Name: NF1111_low_195
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_195 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 5996228 - 5996026
Alignment:
| Q |
36 |
atgaatcaagatttaagcaaatgtgtagatataaggaacaccaaccgtatgtaaattgtgagtcaattcccaactgaagaagatagcaaaactagcaaca |
135 |
Q |
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| T |
5996228 |
atgaatcaagagttaagcaaatgtgtagatataaggaacaccaaccgtatgtaaattgtgagtcaattcccaactgaagaagatagcgaaactagcaaca |
5996129 |
T |
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| Q |
136 |
aaaaatacaatctgctcagcaacaaatttcttcgttgcaatgctgcacttaaaagggtgtggaataatctccaataaaatagcagaaaaaatgaaagcaa |
235 |
Q |
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| T |
5996128 |
aaaaatacaatctgctcagcaacaaatttcttcgttgcaatgctgcacttaaaagggtgtggaataatctccaataaaatagcagaaaaaatgaaagcaa |
5996029 |
T |
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| Q |
236 |
cag |
238 |
Q |
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||| |
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| T |
5996028 |
cag |
5996026 |
T |
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Back To:
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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 1670885 - 1670977
Alignment:
| Q |
69 |
aggaacaccaaccgtatgtaaattgtgagtcaattcccaactgaagaagatagcaaaactagcaacaaaaaatacaatctgctcagcaacaaa |
161 |
Q |
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| T |
1670885 |
aggaacacaaacccgatgtaaagtatgagtcaattcccaacagaagaagatagcaaaagtagcaacaaataacacaatctgctcggctacaaa |
1670977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 1887482 - 1887390
Alignment:
| Q |
69 |
aggaacaccaaccgtatgtaaattgtgagtcaattcccaactgaagaagatagcaaaactagcaacaaaaaatacaatctgctcagcaacaaa |
161 |
Q |
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| T |
1887482 |
aggaacacaaacccgatgtaaagtatgagtcaattcccaacagaagaagatagcaaaagtaggaaccaaaaacacaatctgctcggctacaaa |
1887390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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