View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_196 (Length: 275)
Name: NF1111_low_196
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_196 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 47390864 - 47390763
Alignment:
| Q |
93 |
agtttacggcttgaaacaagtgggagtttgtgtcctgggccaagccaattcccaaacacggattatttccagtctcacccaaagaaaattacatgtttca |
192 |
Q |
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| T |
47390864 |
agtttacagcttgaaacaagtgggagtttgtgtcctgggccaagccaattcccaaacagggattatttccagtctcacccaaagaaaattacatgtttca |
47390765 |
T |
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| Q |
193 |
ta |
194 |
Q |
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|| |
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| T |
47390764 |
ta |
47390763 |
T |
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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 40625257 - 40625358
Alignment:
| Q |
93 |
agtttacggcttgaaacaagtgggagtttgtgtcctgggccaagccaattcccaaacacggattatttc--cagtctcacccaaagaaaattacatgttt |
190 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||| |
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| T |
40625257 |
agtttatggcttgaaacaagtgggagtttgtgtccttggccaagccaattcccaaacaggaattagttccacagtctcacccaaagaaaattacatgttt |
40625356 |
T |
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| Q |
191 |
ca |
192 |
Q |
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|| |
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| T |
40625357 |
ca |
40625358 |
T |
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