View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_197 (Length: 274)
Name: NF1111_low_197
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_197 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 41 - 236
Target Start/End: Original strand, 10980813 - 10981009
Alignment:
| Q |
41 |
tggacatcatcaacaccactggtagttgaaaattttgcaaaagacttcactcctcagcttcgatcttcacatcggaccaattttggctcttttagtgtgg |
140 |
Q |
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| T |
10980813 |
tggacatcagaaacactactggtagttgaaaattttgcaaaagacttcactcctcagcttcgatcttcacaccgaaccagttttggctcttttggtgtgg |
10980912 |
T |
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| Q |
141 |
atccatcaaattcagcgacatcaacaactggaaccacattctcagctgcactctttcccaaggagtttggagtgttcg-agtcacaactggagcaac |
236 |
Q |
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| T |
10980913 |
atccatcaaattcagcgacatcaacaactgaaaccacattctcagctgctctctttcccaaggagtttggagtgttcgaagtcacaactggagcaac |
10981009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 22617629 - 22617662
Alignment:
| Q |
156 |
cgacatcaacaactggaaccacattctcagctgc |
189 |
Q |
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| T |
22617629 |
cgacatcaacaactggaaccacactctcagctgc |
22617662 |
T |
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