View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_198 (Length: 274)

Name: NF1111_low_198
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_198
NF1111_low_198
[»] chr5 (20 HSPs)
chr5 (36-266)||(3741473-3741710)
chr5 (1-38)||(14550139-14550176)
chr5 (1-38)||(18003853-18003890)
chr5 (1-38)||(21369269-21369306)
chr5 (1-38)||(25600659-25600696)
chr5 (5-43)||(6168790-6168828)
chr5 (1-31)||(14274241-14274271)
chr5 (1-38)||(4151147-4151184)
chr5 (1-38)||(4162799-4162836)
chr5 (1-38)||(5226015-5226052)
chr5 (1-38)||(6168675-6168712)
chr5 (1-38)||(8618393-8618430)
chr5 (1-38)||(15385814-15385851)
chr5 (1-38)||(16067180-16067217)
chr5 (1-38)||(21369380-21369417)
chr5 (1-38)||(22635420-22635457)
chr5 (1-38)||(36337841-36337878)
chr5 (1-38)||(36917163-36917200)
chr5 (1-38)||(40271382-40271419)
chr5 (1-38)||(43585602-43585639)
[»] chr6 (12 HSPs)
chr6 (203-266)||(10347743-10347807)
chr6 (1-39)||(32164964-32165002)
chr6 (1-38)||(2157664-2157701)
chr6 (1-38)||(12349811-12349848)
chr6 (1-38)||(22341958-22341995)
chr6 (1-38)||(25371111-25371148)
chr6 (1-38)||(383603-383640)
chr6 (1-38)||(13902019-13902056)
chr6 (1-38)||(15091000-15091037)
chr6 (1-38)||(24914336-24914373)
chr6 (1-38)||(26597272-26597309)
chr6 (1-38)||(32710068-32710105)
[»] chr4 (15 HSPs)
chr4 (1-40)||(31808316-31808355)
chr4 (1-39)||(9011852-9011890)
chr4 (5-39)||(48796171-48796205)
chr4 (1-38)||(7695125-7695162)
chr4 (7-38)||(31808435-31808466)
chr4 (1-39)||(45861000-45861038)
chr4 (1-43)||(47628388-47628430)
chr4 (1-38)||(2994717-2994754)
chr4 (1-46)||(18592333-18592378)
chr4 (1-38)||(30051339-30051376)
chr4 (1-38)||(43635943-43635980)
chr4 (1-38)||(45861112-45861149)
chr4 (1-38)||(54677346-54677383)
chr4 (1-38)||(54927212-54927249)
chr4 (10-38)||(34925912-34925940)
[»] chr3 (18 HSPs)
chr3 (1-42)||(38082506-38082547)
chr3 (1-38)||(42957830-42957867)
chr3 (1-38)||(378711-378748)
chr3 (1-38)||(378795-378832)
chr3 (1-38)||(20547789-20547826)
chr3 (1-38)||(35455559-35455596)
chr3 (1-38)||(48895496-48895533)
chr3 (1-38)||(48895623-48895660)
chr3 (1-38)||(48909141-48909178)
chr3 (1-39)||(25823595-25823633)
chr3 (1-38)||(1126507-1126544)
chr3 (1-38)||(9664466-9664503)
chr3 (1-38)||(33639021-33639058)
chr3 (5-38)||(39333286-39333319)
chr3 (1-38)||(43556865-43556902)
chr3 (1-38)||(48906232-48906269)
chr3 (1-38)||(48908656-48908693)
chr3 (1-49)||(46843688-46843736)
[»] chr1 (28 HSPs)
chr1 (1-42)||(12568428-12568469)
chr1 (1-39)||(31919835-31919873)
chr1 (1-38)||(13911385-13911422)
chr1 (1-38)||(24286761-24286798)
chr1 (1-42)||(30785670-30785711)
chr1 (1-38)||(34121025-34121062)
chr1 (1-38)||(35838825-35838862)
chr1 (1-38)||(42468851-42468888)
chr1 (1-38)||(42468950-42468987)
chr1 (1-38)||(43147542-43147579)
chr1 (1-31)||(435313-435343)
chr1 (1-47)||(18023720-18023766)
chr1 (5-39)||(38149475-38149509)
chr1 (5-39)||(49980705-49980739)
chr1 (1-38)||(1344475-1344512)
chr1 (1-38)||(11994856-11994893)
chr1 (1-38)||(15998318-15998355)
chr1 (1-38)||(22954879-22954916)
chr1 (1-38)||(30785556-30785593)
chr1 (1-38)||(31414863-31414900)
chr1 (1-38)||(34662401-34662438)
chr1 (1-38)||(35161327-35161364)
chr1 (1-38)||(38149360-38149397)
chr1 (1-38)||(39151720-39151757)
chr1 (1-38)||(42914643-42914680)
chr1 (1-38)||(47912679-47912716)
chr1 (1-38)||(49188313-49188349)
chr1 (10-38)||(32914204-32914232)
[»] chr2 (22 HSPs)
chr2 (1-40)||(38962435-38962474)
chr2 (1-39)||(18468936-18468974)
chr2 (1-39)||(18469048-18469086)
chr2 (1-39)||(21208999-21209037)
chr2 (1-39)||(27692709-27692747)
chr2 (1-38)||(27692598-27692635)
chr2 (5-38)||(42792765-42792798)
chr2 (3-38)||(22352439-22352474)
chr2 (1-31)||(19908508-19908538)
chr2 (1-31)||(42792669-42792699)
chr2 (1-38)||(6048069-6048106)
chr2 (1-38)||(7354766-7354803)
chr2 (1-38)||(18649617-18649654)
chr2 (1-38)||(18649703-18649740)
chr2 (1-38)||(21208888-21208925)
chr2 (1-38)||(32870287-32870324)
chr2 (1-38)||(33425404-33425441)
chr2 (5-38)||(33618193-33618226)
chr2 (1-38)||(33618304-33618341)
chr2 (1-38)||(40846571-40846608)
chr2 (1-33)||(3094922-3094954)
chr2 (1-33)||(36396962-36396994)
[»] chr8 (17 HSPs)
chr8 (1-38)||(4786767-4786804)
chr8 (1-38)||(8769637-8769674)
chr8 (1-38)||(11295915-11295952)
chr8 (1-31)||(18126058-18126088)
chr8 (1-39)||(38815798-38815836)
chr8 (1-38)||(4786698-4786735)
chr8 (1-38)||(5526604-5526641)
chr8 (1-38)||(7011899-7011936)
chr8 (5-42)||(11295995-11296032)
chr8 (1-38)||(19163426-19163463)
chr8 (1-38)||(30245611-30245648)
chr8 (1-42)||(36308621-36308662)
chr8 (1-38)||(38815910-38815947)
chr8 (1-38)||(44838770-44838807)
chr8 (1-38)||(45145598-45145635)
chr8 (1-37)||(33570615-33570651)
chr8 (1-41)||(36315031-36315071)
[»] chr7 (11 HSPs)
chr7 (5-38)||(48339078-48339111)
chr7 (1-41)||(39098408-39098448)
chr7 (5-39)||(2927181-2927215)
chr7 (1-38)||(2850972-2851009)
chr7 (1-38)||(2851083-2851120)
chr7 (1-38)||(5212150-5212187)
chr7 (1-38)||(10300817-10300854)
chr7 (1-38)||(10300928-10300965)
chr7 (5-38)||(16810924-16810957)
chr7 (1-38)||(23735995-23736032)
chr7 (1-37)||(43067021-43067057)
[»] scaffold0036 (2 HSPs)
scaffold0036 (1-39)||(36517-36555)
scaffold0036 (1-38)||(36406-36443)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-38)||(22298-22335)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-38)||(43871-43908)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 266
Target Start/End: Complemental strand, 3741710 - 3741473
Alignment:
Q  36 gtaaatggtaatttgagtgactttacatcggtgtgtgttt--aggttttcataaatcttttggttctaaaaagaatacgactttaaggaaaacattttta 133  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3741710 gtaaatggtaatttgagtgactttacatcggtgtgtgtttttaggttttcataaatcttttggttctaaaaagaatacgactttaaggaaaacattttta 3741611  T
Q  134 tagatattcaattttcataaatctttcggttccaaaaagattacgattttgatgtatacatctgaagg-----ctattacatgagaataagaaaattccc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||| ||||    
T  3741610 tagatattcaattttcataaatctttcggttccaaaaagattacgattttgatgtatacatctgaaggtcggtttattacatgagaataagaaaactccc 3741511  T
Q  229 tttaacaactttaaaataagatatgaactagaataatc 266  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3741510 tttaacaactttaaaataagatatgaactagaataatc 3741473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14550139 - 14550176
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  14550139 aaagtgaattttgcttatattttaaaacggagggagta 14550176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18003890 - 18003853
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18003890 aaagtgaattttgcttatattttgaaacggatggagta 18003853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21369306 - 21369269
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  21369306 aaagtgaattttgcttatattttgaaacggatggagta 21369269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25600659 - 25600696
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25600659 aaagtgaattttgtttatattttaaaacggatggagta 25600696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 6168790 - 6168828
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagtaaatgg 43  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  6168790 tgaattttgcttatattttgaaacggatggagtagatgg 6168828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 14274241 - 14274271
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacgga 31  Q
    |||||||||||||||||||||||||||||||    
T  14274241 aaagtgaattttgcttatattttaaaacgga 14274271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4151184 - 4151147
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  4151184 aaagtcaattttgcttatatttaaaaacggatggagta 4151147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4162836 - 4162799
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  4162836 aaagtgaattttgcttatattttgaaacggaaggagta 4162799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5226052 - 5226015
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  5226052 aaagtgaattttgcttatattttgaaacggagggagta 5226015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6168712 - 6168675
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  6168712 aaagtgaattttgcttatattttgaaacggagggagta 6168675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8618430 - 8618393
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  8618430 aaagtgaattttgcttatattttgaaacggagggagta 8618393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15385851 - 15385814
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| || |||||||||||||||||||||||||||||    
T  15385851 aaagtaaaatttgcttatattttaaaacggatggagta 15385814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16067180 - 16067217
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  16067180 aaagtgaattttgcttatattttgaaacggagggagta 16067217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21369380 - 21369417
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  21369380 aaagtaaattttgcttatattttaaaacggagggagta 21369417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22635420 - 22635457
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  22635420 aaagtgaaatttgcttatattttaaaacggagggagta 22635457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36337841 - 36337878
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  36337841 aaagtgaattttgcttatatttaaaaacggagggagta 36337878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36917200 - 36917163
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  36917200 aaagtgaattttgcttatactttaaaacggagggagta 36917163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40271382 - 40271419
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  40271382 aaagtaaattttgcttatatttaaaaacggatggagta 40271419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43585602 - 43585639
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  43585602 aaagtaaattttgcttatatttaaaaacggatggagta 43585639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 10347807 - 10347743
Alignment:
Q  203 tattacatgagaataagaaaattccctttaacaac-tttaaaataagatatgaactagaataatc 266  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10347807 tattacatgagaataagaaaattccctttaacaacttttaaaataagatatgaactagaataatc 10347743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32164964 - 32165002
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  32164964 aaagtgaattttgcttatattttgaaacggatggagtaa 32165002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2157664 - 2157701
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  2157664 aaagtgaattttgcttatattttgaaacggatggagta 2157701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12349848 - 12349811
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  12349848 aaagtgaattttgcttatattttgaaacggatggagta 12349811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22341995 - 22341958
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  22341995 aaagtgaattttgcttatattttaaaacggagggagta 22341958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25371111 - 25371148
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  25371111 aaagtgaattttgcttatattttgaaacggatggagta 25371148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 383640 - 383603
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  383640 aaagtgaattttgcttatattttgaaacggagggagta 383603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13902056 - 13902019
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  13902056 aaagtcaattttgcttatatttaaaaacggatggagta 13902019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15091000 - 15091037
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  15091000 aaagtgaattttgtttatattttaaaacggaaggagta 15091037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24914373 - 24914336
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  24914373 aaagtgaattttgcttatattttgaaacggagggagta 24914336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26597272 - 26597309
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  26597272 aaagtgaattttgcttatattttgaaacggagggagta 26597309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32710105 - 32710068
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  32710105 aaagtgaattttacttatattttaaaacggagggagta 32710068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31808355 - 31808316
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31808355 aaagtgaattttgcttatattttaaaacggatggagtaaa 31808316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9011852 - 9011890
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9011852 aaagtgaattttgcttatattttaaaacggagggagtaa 9011890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 48796205 - 48796171
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagtaa 39  Q
    |||||||||||||||||||||||||||||||||||    
T  48796205 tgaattttgcttatattttaaaacggatggagtaa 48796171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7695162 - 7695125
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7695162 aaagtgaattttgcttatattttgaaacggatggagta 7695125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 31808435 - 31808466
Alignment:
Q  7 aattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||||    
T  31808435 aattttgcttatattttaaaacggatggagta 31808466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 45861038 - 45861000
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  45861038 aaagtgaattttgcttatattttgaaacggagggagtaa 45861000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47628388 - 47628430
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaatgg 43  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  47628388 aaagtgaattttgcttatattttgaaacggagggagtagatgg 47628430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2994754 - 2994717
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  2994754 aaagtgaattttgcttatattttgaaacggagggagta 2994717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18592378 - 18592333
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaatggtaa 46  Q
    ||||| |||||||||||||||| |||||||| |||||| |||||||    
T  18592378 aaagtcaattttgcttatatttaaaaacggagggagtacatggtaa 18592333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30051376 - 30051339
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| || |||||||||||||||||||||||||||||    
T  30051376 aaagttaaatttgcttatattttaaaacggatggagta 30051339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43635943 - 43635980
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| || |||||||||||||||||||||||||||||    
T  43635943 aaagtaaaatttgcttatattttaaaacggatggagta 43635980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45861112 - 45861149
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  45861112 aaagtgaattttgcttatattttgaaacggagggagta 45861149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54677383 - 54677346
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  54677383 aaagtgaattttgcttatattttgaaacggagggagta 54677346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 54927212 - 54927249
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  54927212 aaagtgaattttgcttatattttgaaacggagggagta 54927249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 34925940 - 34925912
Alignment:
Q  10 tttgcttatattttaaaacggatggagta 38  Q
    |||||||||||||||||||||||||||||    
T  34925940 tttgcttatattttaaaacggatggagta 34925912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38082547 - 38082506
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaatg 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  38082547 aaagtgaattttgcttatattttgaaacggatggagtaaatg 38082506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42957867 - 42957830
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42957867 aaagtgaattttgcttatattttaaaacggatggagta 42957830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 378748 - 378711
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  378748 aaagtgaattttgcttatattttaaaacggagggagta 378711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 378795 - 378832
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  378795 aaagtgaattttgcttatattttaaaacggagggagta 378832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20547826 - 20547789
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  20547826 aaagtgaattttgcttatattttaaaacggagggagta 20547789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35455596 - 35455559
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  35455596 aaagtgaattttgcttatattttaaaacggagggagta 35455559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48895533 - 48895496
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  48895533 aaagtgaattttgcttatattttaaaacggagggagta 48895496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48895623 - 48895660
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  48895623 aaagtgaattttgcttatattttaaaacggagggagta 48895660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48909141 - 48909178
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  48909141 aaagtgaattttgcttatattttaaaacggagggagta 48909178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25823633 - 25823595
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  25823633 aaagtgaattttgcttatatttaaaaacggaaggagtaa 25823595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1126507 - 1126544
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  1126507 aaagtgaatcttgcttatattttaaaacggagggagta 1126544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9664466 - 9664503
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  9664466 aaagtaaattttgcttatatttaaaaacggatggagta 9664503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33639021 - 33639058
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  33639021 aaagtgaattttgcttatatttaaaaacggagggagta 33639058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 39333319 - 39333286
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||| ||||||    
T  39333319 tgaattttgcttatattttaaaacggagggagta 39333286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43556902 - 43556865
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  43556902 aaagtgatttttgcttatattttaaaacggaaggagta 43556865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48906232 - 48906269
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  48906232 aaagtaaattttgcttatatttaaaaacggatggagta 48906269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48908693 - 48908656
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  48908693 aaagtgaattttgcttatattttgaaacggagggagta 48908656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46843688 - 46843736
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaatggtaattt 49  Q
    ||||| |||||||||||||||| |||||||| |||||| ||| ||||||    
T  46843688 aaagtcaattttgcttatatttaaaaacggagggagtatatgataattt 46843736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12568469 - 12568428
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaatg 42  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  12568469 aaagtgaattttgcttatattttaaaacggagggagtaaatg 12568428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31919873 - 31919835
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  31919873 aaagtgaattttgcttatattttaaaacggagggagtaa 31919835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13911385 - 13911422
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  13911385 aaagtgaattttgcttatattttgaaacggatggagta 13911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24286798 - 24286761
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24286798 aaagtgaattttgcttatattttgaaacggatggagta 24286761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30785670 - 30785711
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaatg 42  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  30785670 aaagtgaattttgcttatattttgaaacggatggaataaatg 30785711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34121025 - 34121062
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  34121025 aaagtaaattttgcttatattttaaaacggatggagta 34121062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35838825 - 35838862
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  35838825 aaagtgaattttgcttatattttgaaacggatggagta 35838862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42468888 - 42468851
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  42468888 aaagtgaattttgcttatattttaaaacggaaggagta 42468851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42468950 - 42468987
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  42468950 aaagtgaattttgcttatattttaaaacggaaggagta 42468987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43147542 - 43147579
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  43147542 aaagtgaattttgcttatattttaaaacggagggagta 43147579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 435313 - 435343
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacgga 31  Q
    |||||||||||||||||||||||||||||||    
T  435313 aaagtgaattttgcttatattttaaaacgga 435343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18023720 - 18023766
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaatggtaat 47  Q
    ||||||||||||||||||||||| | |||||||||||| | ||||||    
T  18023720 aaagtgaattttgcttatattttgatacggatggagtatagggtaat 18023766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 38149475 - 38149509
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||||||| |||||||    
T  38149475 tgaattttgcttatattttaaaacggagggagtaa 38149509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 49980705 - 49980739
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||| |||||||||||||||    
T  49980705 tgaattttgcttatattttgaaacggatggagtaa 49980739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1344475 - 1344512
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  1344475 aaagtaaattttgcttatattttaaaacggagggagta 1344512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11994893 - 11994856
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  11994893 aaagtgaattttgcttatattttgaaacggagggagta 11994856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15998318 - 15998355
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  15998318 aaagtgaattttgcttatattttgaaacggagggagta 15998355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22954879 - 22954916
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  22954879 aaagtgaattttgcttatattttaacacggagggagta 22954916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30785593 - 30785556
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  30785593 aaagtgaattttgcttatatgttaaaacggagggagta 30785556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31414863 - 31414900
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  31414863 aaagtgaattttgcttatattttgaaacggagggagta 31414900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34662438 - 34662401
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  34662438 aaagtgaattttgcttatattttgaaacggagggagta 34662401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35161327 - 35161364
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  35161327 aaagtgaattttgcttatattttgaaacggattgagta 35161364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38149397 - 38149360
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  38149397 aaagtgaattttgcttatattttgaaacggaaggagta 38149360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39151757 - 39151720
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  39151757 aaagtgaattttgcttatattttgaaacggagggagta 39151720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42914643 - 42914680
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  42914643 aaagtgaattttgcttatattttgaaacagatggagta 42914680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47912679 - 47912716
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  47912679 aaagtaaattttgcttatattttaaaacggaaggagta 47912716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49188313 - 49188349
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  49188313 aaagtgaattttgcttatatttt-aaacggatggagta 49188349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 32914232 - 32914204
Alignment:
Q  10 tttgcttatattttaaaacggatggagta 38  Q
    |||||||||||||||||||||||||||||    
T  32914232 tttgcttatattttaaaacggatggagta 32914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38962474 - 38962435
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaa 40  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  38962474 aaagtgaattttgcttatattttaaaacggagggagtaaa 38962435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18468974 - 18468936
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18468974 aaagtgaattttgcttatattttgaaacggatggagtaa 18468936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18469048 - 18469086
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18469048 aaagtgaattttgcttatattttgaaacggatggagtaa 18469086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21208999 - 21209037
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21208999 aaagtgaattttgcttatattttaaaacggagggagtaa 21209037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27692709 - 27692747
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  27692709 aaagtgaattttgcttatattttgaaacggatggagtaa 27692747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27692635 - 27692598
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27692635 aaagtgaattttgcttatattttaaaacggaaggagta 27692598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 42792765 - 42792798
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||||||    
T  42792765 tgaattttgcttatattttaaaacggatggagta 42792798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 22352474 - 22352439
Alignment:
Q  3 agtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22352474 agtgaattttgcttatattttgaaacggatggagta 22352439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 19908538 - 19908508
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacgga 31  Q
    |||||||||||||||||||||||||||||||    
T  19908538 aaagtgaattttgcttatattttaaaacgga 19908508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 42792699 - 42792669
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacgga 31  Q
    |||||||||||||||||||||||||||||||    
T  42792699 aaagtgaattttgcttatattttaaaacgga 42792669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6048069 - 6048106
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  6048069 aaagtgaattttgcttatattttgaaacggagggagta 6048106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7354803 - 7354766
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  7354803 aaagtgaattttgcttatattttgaaacggagggagta 7354766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18649654 - 18649617
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  18649654 aaagtgaattttgcttatattttgaaacggagggagta 18649617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18649703 - 18649740
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  18649703 aaagtgaattttgcttatattttgaaacggaaggagta 18649740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21208925 - 21208888
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  21208925 aaagtgaattttgcttatattttgaaacggagggagta 21208888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32870324 - 32870287
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  32870324 aaagtgaattttgcttatattttaagacggatgaagta 32870287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33425404 - 33425441
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  33425404 aaagtcaattttgcttatatttaaaaacggatggagta 33425441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 33618226 - 33618193
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||| ||||||||||||||    
T  33618226 tgaattttgcttatattttgaaacggatggagta 33618193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33618304 - 33618341
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  33618304 aaagtgaattttgcttatattttgaaacggagggagta 33618341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40846571 - 40846608
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  40846571 aaagtgaattttgtttatattttaaaacggagggagta 40846608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3094954 - 3094922
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatg 33  Q
    ||||||||||||||||||||||| |||||||||    
T  3094954 aaagtgaattttgcttatattttgaaacggatg 3094922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36396962 - 36396994
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatg 33  Q
    |||||||||||||||||||||||||||| ||||    
T  36396962 aaagtgaattttgcttatattttaaaacagatg 36396994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4786767 - 4786804
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  4786767 aaagtgaattttgcttatattttgaaacggatggagta 4786804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8769674 - 8769637
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  8769674 aaagtgaattttgcttatattttgaaacggatggagta 8769637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11295952 - 11295915
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  11295952 aaagtgaattttgcttatattttgaaacggatggagta 11295915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 18126088 - 18126058
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacgga 31  Q
    |||||||||||||||||||||||||||||||    
T  18126088 aaagtgaattttgcttatattttaaaacgga 18126058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38815836 - 38815798
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  38815836 aaagtgaattttgcttatattttgaaacggagggagtaa 38815798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4786735 - 4786698
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  4786735 aaagtgaattttgcttatattttgaaacggagggagta 4786698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5526604 - 5526641
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  5526604 aaagtgaattttgcttatattttgaaacggagggagta 5526641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7011899 - 7011936
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  7011899 aaagtgaattttgcttatattttgaaacggaaggagta 7011936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 11295995 - 11296032
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagtaaatg 42  Q
    ||||||||||||||||||||| || |||||||||||||    
T  11295995 tgaattttgcttatattttaagacagatggagtaaatg 11296032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19163426 - 19163463
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  19163426 aaagtgaattttgcttatattttgaaacggagggagta 19163463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30245611 - 30245648
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  30245611 aaagtgaattttacttatattttaaaacggagggagta 30245648  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36308621 - 36308662
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaatg 42  Q
    |||||||||||| |||||||||| ||||||||| ||||||||    
T  36308621 aaagtgaattttacttatattttgaaacggatgaagtaaatg 36308662  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38815910 - 38815947
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  38815910 aaagtgaattttgcttatattttgaaacggagggagta 38815947  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44838807 - 44838770
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  44838807 aaagtcaattttgcttatatttaaaaacggatggagta 44838770  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45145635 - 45145598
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  45145635 aaagtgaattttgcttatattttgaaacggagggagta 45145598  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33570615 - 33570651
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagt 37  Q
    |||||||||||| |||||||||||||||||| |||||    
T  33570615 aaagtgaattttacttatattttaaaacggagggagt 33570651  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36315031 - 36315071
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaat 41  Q
    |||||||||||| |||||||||| ||||||| |||||||||    
T  36315031 aaagtgaattttacttatattttgaaacggaaggagtaaat 36315071  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 48339078 - 48339111
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||||||||||    
T  48339078 tgaattttgcttatattttaaaacggatggagta 48339111  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39098408 - 39098448
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaaat 41  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  39098408 aaagtgaattttgcttatatttaaaaacagatggagtaaat 39098448  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 2927215 - 2927181
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagtaa 39  Q
    ||||||||||||||||||||||||||| |||||||    
T  2927215 tgaattttgcttatattttaaaacggagggagtaa 2927181  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2851009 - 2850972
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  2851009 aaagtgaattttgcttatattttgaaacggagggagta 2850972  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2851083 - 2851120
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  2851083 aaagtgaattttgcttatattttgaaaaggatggagta 2851120  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5212150 - 5212187
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  5212150 aaagtgaattttacttatattttaaaacggagggagta 5212187  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10300854 - 10300817
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  10300854 aaagtgaattttgcttatattttaaaatggagggagta 10300817  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10300928 - 10300965
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  10300928 aaagtgaattttgcttatattttgaaacggagggagta 10300965  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 16810924 - 16810957
Alignment:
Q  5 tgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||||||| ||||||    
T  16810924 tgaattttgcttatattttaaaacggagggagta 16810957  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23736032 - 23735995
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  23736032 aaagtaaattttgcttatatttaaaaacggatggagta 23735995  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43067057 - 43067021
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagt 37  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  43067057 aaagtaaattttgcttatattttgaaacggatggagt 43067021  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36517 - 36555
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagtaa 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  36517 aaagtgaattttgcttatattttagaacggagggagtaa 36555  T

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Target: scaffold0036; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36443 - 36406
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  36443 aaagtgaattttgcttatattttgaaacggagggagta 36406  T

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Target: scaffold0200 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22335 - 22298
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  22335 aaagtgaatttttcttatattttgaaacggatggagta 22298  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43908 - 43871
Alignment:
Q  1 aaagtgaattttgcttatattttaaaacggatggagta 38  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  43908 aaagttaattttgcttatatttcaaaacggatggagta 43871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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