View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_199 (Length: 274)
Name: NF1111_low_199
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_199 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 28887067 - 28886790
Alignment:
| Q |
1 |
attttgtagagattttcaggaaaatcaagtaatggattatgttagataaataaataatgtccaagggagtttatcatttttacaccattctatcaccctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887067 |
attttgtagagattttcaggaaaatcaagtaatggattatgttagataaataaataatgtccaagggagtttatcatttttacaccattctatcaccctt |
28886968 |
T |
|
| Q |
101 |
gtctctcctcca-------------------gcaacatcaacttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccat |
181 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28886967 |
gtctctcctccatgtccccactcacccgccagcaacatcaatttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccat |
28886868 |
T |
|
| Q |
182 |
aaatctatcattcaactgatgaagaacctctataaatcctacagaaaaacactaaaggctaacattttgttcaattat |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28886867 |
aaatctatcattcaactgatgaagaacctctataaatcctacagaaaaacactaaaagctaacattttgttcaattat |
28886790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 110 - 255
Target Start/End: Complemental strand, 32871025 - 32870880
Alignment:
| Q |
110 |
ccagcaacatcaacttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccataaatctatcattcaactgatgaagaacc |
209 |
Q |
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| T |
32871025 |
ccagcaacatgaacttcaccaccagcaccgccctcccaaacctcacaactttatcccccttattacatccataaatatattattcaactgattaagaacc |
32870926 |
T |
|
| Q |
210 |
tctataaatcctacagaaaaacactaaaggctaacattttgttcaa |
255 |
Q |
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| T |
32870925 |
tttataaatcttacaataaaacactaaaagctaacatttagttcaa |
32870880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 7987571 - 7987715
Alignment:
| Q |
110 |
ccagcaacatcaacttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccataaatctatcattcaactgatgaagaacc |
209 |
Q |
| |
|
|||||||||| |||||||||| ||||| | |||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||| |
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| T |
7987571 |
ccagcaacatgaacttcaccatcagcaccgccctcccaaacctcacaactt-atcccccttattacatccataaatctattattcaactgattaagaacc |
7987669 |
T |
|
| Q |
210 |
tctataaatcctacagaaaaacactaaaggctaacattttgttcaa |
255 |
Q |
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| T |
7987670 |
tttataaatcttacaataaaacactaaaagctaacattttgttcaa |
7987715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 5929792 - 5929745
Alignment:
| Q |
150 |
cctcacaactttatcccccttattgcatccataaatctatcattcaac |
197 |
Q |
| |
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||||||||| ||| |||| ||||||||||||||||||||| ||||||| |
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| T |
5929792 |
cctcacaaccttaccccctttattgcatccataaatctattattcaac |
5929745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 40050306 - 40050223
Alignment:
| Q |
113 |
gcaacatcaacttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccataaatctatcattcaac |
197 |
Q |
| |
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||||||||||||||||||| |||| | |||||| | |||||| ||| ||| | | ||||||||||||||||||||| ||||||| |
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| T |
40050306 |
gcaacatcaacttcaccac-agcaccgccctcctatacctcagaaccttacctcttttattgcatccataaatctattattcaac |
40050223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 32144572 - 32144632
Alignment:
| Q |
12 |
attttcaggaaaa-tcaagtaatggattatgttagataaataaataatgtccaagggagtt |
71 |
Q |
| |
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||||||||||||| ||||||| |||||||||| | ||||||||||| |||| | ||||||| |
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| T |
32144572 |
attttcaggaaaaatcaagtattggattatgtcatataaataaatattgtcaatgggagtt |
32144632 |
T |
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