View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_20 (Length: 510)
Name: NF1111_low_20
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 32502177 - 32502686
Alignment:
| Q |
1 |
gggcatggtaatgttgcatctaaactaattgagtactgttgtcctagttaacacagttgcaaaatgaattataacctagttgaaaatgaattttaatctg |
100 |
Q |
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| T |
32502177 |
gggcatggtaatgttgcatctaaactaattgagtactgttgtcctagttaacacagttgcaaaatgaattataacctagttgaaaatgaattttaatccg |
32502276 |
T |
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| Q |
101 |
gctgcagtttactgtaacaaagacaaactaaatttgttttggattaatgataatgttacaatctcgaatttgaagagccaattgaatggtattctcaatc |
200 |
Q |
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| T |
32502277 |
gctgcagtttactgtaacaaagacaaactaaatttgttttggattaatgataatgttacaatctcgaatttgaagagataattaaatggtattctcaatc |
32502376 |
T |
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| Q |
201 |
aaagtcacccaagaatggtggtcattgttaagtatcgtggtgcatcggtcgactcaaatggacatgtttaactcaccaaaatgaaatttcaaaatgacag |
300 |
Q |
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| T |
32502377 |
aaagtgacccaagaatggtggtcattgttaagtatcgtggtgcatcggtcgactcaaatggacacgtttaactcaccaaaatgaaatttcaaaatgacaa |
32502476 |
T |
|
| Q |
301 |
cgatgtaagaaccatgttgtctatattcacttagtataatttcatgggaccgtcaagttagacactatcttggtcaaatttgttcatgttattgagacaa |
400 |
Q |
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| T |
32502477 |
cgatgtaagaaccatgttgtctatattcacttagtataatttcatgggaccgtcgagttagacactatcttggtcaaatttgttcatgttattgagacaa |
32502576 |
T |
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| Q |
401 |
acttcattttcccaggacattcaaagaaattgcaatttacaattttgaatccggctaagaaagcacgccatcttgtgatagtgctactagcttggctaat |
500 |
Q |
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| T |
32502577 |
gcttcattttcccaggacattcaaagaaattgcaatttacaattttgaatccggctaagaaagcacgccatcttgtgatagtgctactagcttggctaat |
32502676 |
T |
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| Q |
501 |
ccatgatatt |
510 |
Q |
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| T |
32502677 |
ccatgatatt |
32502686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 11648397 - 11648282
Alignment:
| Q |
83 |
aaaatgaattttaatctggctgcagtttactgtaacaaagacaaactaaatttgtt---ttggattaatgataatgttacaatctcgaatttgaagagcc |
179 |
Q |
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|||||||||||||| || ||| |||||||| ||||| | ||||||||||||||| | | || ||||||||||||||| | | |||||||||||| |
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| T |
11648397 |
aaaatgaattttaacctagctcgagtttactataacagtggcaaactaaatttgttaattagaatcaatgataatgttacactttatgatttgaagagcc |
11648298 |
T |
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| Q |
180 |
aattgaatggtattct |
195 |
Q |
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| T |
11648297 |
aactgaatggtcttct |
11648282 |
T |
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