View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_201 (Length: 273)
Name: NF1111_low_201
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_201 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 23044796 - 23044675
Alignment:
| Q |
34 |
atgaaaagtacatccagtatcaagaatccattctgttttactcctcttattagaggatacaatagataaagtaatgtcatcgccagaatcagcttcaata |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
23044796 |
atgaaaagtacatccagtatcaagaatccattctgttttactcctcttattagaggatacaacaaataaagtaatgtcatcgccagaatcagcttcaata |
23044697 |
T |
|
| Q |
134 |
ttggcagcttcagaggattgtg |
155 |
Q |
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||||||||||||| |||||||| |
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| T |
23044696 |
ttggcagcttcaggggattgtg |
23044675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 23044636 - 23044595
Alignment:
| Q |
194 |
aagataaaacaatcagaaatctcatggccagatttcttgcaa |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
23044636 |
aagataaaacaatcagaaatctcatggccagatttcttgcaa |
23044595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 29471997 - 29471876
Alignment:
| Q |
34 |
atgaaaagtacatccagtatcaagaatccattctgttttactcctcttattagaggatacaatagataaagtaatgtcatcgccagaatcagcttcaata |
133 |
Q |
| |
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|||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || |||| |
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| T |
29471997 |
atgaaaagtacacccagtagcaagaatctattctgttttactcctcttattagaggagacaacaaataaagtaatgtcatcgccagaatcaaatttaata |
29471898 |
T |
|
| Q |
134 |
ttggcagcttcagaggattgtg |
155 |
Q |
| |
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|||||||||| || |||||||| |
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| T |
29471897 |
ttggcagctttaggggattgtg |
29471876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 29472101 - 29472049
Alignment:
| Q |
34 |
atgaaaagtacatccagtatcaagaatccattctgttttactcctcttattag |
86 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
29472101 |
atgaaaagtacatccagtagcaagaatctattctgttttactcctcttattag |
29472049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 29471837 - 29471796
Alignment:
| Q |
194 |
aagataaaacaatcagaaatctcatggccagatttcttgcaa |
235 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29471837 |
aagagaaaacaatcagaaatctcatggccagatttcttgcaa |
29471796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 15240598 - 15240685
Alignment:
| Q |
68 |
gttttactcctcttattagaggatacaatagataaagtaatgtcatcgccagaatcagcttcaatattggcagcttcagaggattgtg |
155 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
15240598 |
gttttactcctcttattagaggagacaacagataaagtaatgtcatcgccagaatcagcttctatattggcagcttcaggggattgtg |
15240685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 15240724 - 15240765
Alignment:
| Q |
194 |
aagataaaacaatcagaaatctcatggccagatttcttgcaa |
235 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15240724 |
aagataaaacaatcagaaatcttatggccagatttcttgcaa |
15240765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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