View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_204 (Length: 271)

Name: NF1111_low_204
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_204
NF1111_low_204
[»] chr3 (9 HSPs)
chr3 (1-137)||(23139911-23140047)
chr3 (3-136)||(23148625-23148758)
chr3 (2-136)||(23038907-23039041)
chr3 (2-136)||(23036036-23036170)
chr3 (4-137)||(23024140-23024273)
chr3 (3-136)||(23145787-23145920)
chr3 (1-136)||(23016927-23017062)
chr3 (216-271)||(24281584-24281639)
chr3 (3-136)||(23032581-23032714)
[»] scaffold0554 (1 HSPs)
scaffold0554 (1-136)||(6754-6889)
[»] chr6 (1 HSPs)
chr6 (1-136)||(21779678-21779813)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-135)||(62018-62152)
[»] chr1 (2 HSPs)
chr1 (2-136)||(12609771-12609905)
chr1 (4-136)||(12636869-12637001)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 23139911 - 23140047
Alignment:
Q  1 actccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23139911 actccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacat 23140010  T
Q  101 ttctcaaaccaaatatgcttcctgggcatattcttcg 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  23140011 ttctcaaaccaaatatgcttcctgggcatattcttcg 23140047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 23148625 - 23148758
Alignment:
Q  3 tccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacattt 102  Q
    |||||||||||| |||||||||| |||||||| | | |||||||| ||||||||||| ||||||| | |||||||  |||| |||| || ||||| ||||    
T  23148625 tccaaattcctcagtcatatccatttcttcacctgttattccactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatattt 23148724  T
Q  103 ctcaaaccaaatatgcttcctgggcatattcttc 136  Q
    ||||||||||||||||| ||||||||||||||||    
T  23148725 ctcaaaccaaatatgctccctgggcatattcttc 23148758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 23038907 - 23039041
Alignment:
Q  2 ctccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatt 101  Q
    |||| ||||| || ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| | |||||||  ||||||||| || ||||| | |    
T  23038907 ctccgaattcatcagtcatatccaagtcttcacttctgattccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatact 23039006  T
Q  102 tctcaaaccaaatatgcttcctgggcatattcttc 136  Q
    ||||||||||||| |||| ||||||||||||||||    
T  23039007 tctcaaaccaaatgtgctccctgggcatattcttc 23039041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 23036036 - 23036170
Alignment:
Q  2 ctccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatt 101  Q
    |||||||||| || ||||| ||||||||||||||| | |||||||| ||||||||||| ||||||| | |||||||  | ||||||| ||  |||| |||    
T  23036036 ctccaaattcgtcagtcatgtccaattcttcacttttgattccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatt 23036135  T
Q  102 tctcaaaccaaatatgcttcctgggcatattcttc 136  Q
    ||||||||||||| |||| ||||||||||||||||    
T  23036136 tctcaaaccaaatgtgctccctgggcatattcttc 23036170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 23024140 - 23024273
Alignment:
Q  4 ccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttc 103  Q
    ||||||| ||| ||||| ||||||||||||||| | |||||| | |||||||||||||||||||   |||||||  |||||||||  | ||||||| |||    
T  23024140 ccaaatttctcagtcatgtccaattcttcacttttgattccattaggaagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttc 23024239  T
Q  104 tcaaaccaaatatgcttcctgggcatattcttcg 137  Q
     ||||||||||||||| ||||| |||||||||||    
T  23024240 gcaaaccaaatatgctccctggacatattcttcg 23024273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 23145787 - 23145920
Alignment:
Q  3 tccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacattt 102  Q
    |||||||||||| |||||||||| |||||||| | | |||||||| ||||||||||| ||||||| | |||| ||  ||||||||  || ||||| ||||    
T  23145787 tccaaattcctcagtcatatccatttcttcacctgttattccactaggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatattt 23145886  T
Q  103 ctcaaaccaaatatgcttcctgggcatattcttc 136  Q
     ||||||||||| |||| ||||| ||||||||||    
T  23145887 gtcaaaccaaatgtgctccctggacatattcttc 23145920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 23016927 - 23017062
Alignment:
Q  1 actccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacat 100  Q
    |||||||||| ||| ||||| |||| ||| |||| | | |||||||  ||||||||||| ||||||| | |||||||  | ||||||| |||||||||||    
T  23016927 actccaaattgctcagtcatgtccagttcgtcacatttgattccaccgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacat 23017026  T
Q  101 ttctcaaaccaaatatgcttcctgggcatattcttc 136  Q
    |||||||||| ||| | || || |||||||||||||    
T  23017027 ttctcaaaccgaatgtactcccagggcatattcttc 23017062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 24281584 - 24281639
Alignment:
Q  216 atataagattcaacatcacgtgttatctcaaatttaaacacatgaatcaatcacca 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  24281584 atataagattcaacatcacttgttatctcaaatttaaacacatgaatcaaccacca 24281639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 23032581 - 23032714
Alignment:
Q  3 tccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacattt 102  Q
    |||||||||||| ||||| || | |||| ||||||| ||||||   |||||| |||| ||||||| | |||||||  | || |||| || ||||| ||||    
T  23032581 tccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcgagggccagctcaatattt 23032680  T
Q  103 ctcaaaccaaatatgcttcctgggcatattcttc 136  Q
    |||||||||||| | || ||||||||||||||||    
T  23032681 ctcaaaccaaatgtactccctgggcatattcttc 23032714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6889 - 6754
Alignment:
Q  1 actccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacat 100  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||  ||||||||||| ||||||| | |||||||  | ||||| | || ||||||||    
T  6889 actccaaattcctctgtcatgtccaattcttcacttttgattccacatggaagcttccagtcaaaatgatacaacaacatcgcaagcgccagctcaacat 6790  T
Q  101 ttctcaaaccaaatatgcttcctgggcatattcttc 136  Q
    |||||||||||||||| ||||||||||| |||||||    
T  6789 ttctcaaaccaaatatacttcctgggcaaattcttc 6754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 21779678 - 21779813
Alignment:
Q  1 actccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacat 100  Q
    ||||| |||||||| ||||| ||||||||||||||| | || ||||| ||||||||||| ||||||| | |||||||  | |||||||||  ||||| ||    
T  21779678 actccgaattcctcagtcatgtccaattcttcacttttgatcccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggtcgtctcaatat 21779777  T
Q  101 ttctcaaaccaaatatgcttcctgggcatattcttc 136  Q
    |||||||||||||| |||| ||||||||||||||||    
T  21779778 ttctcaaaccaaatgtgctccctgggcatattcttc 21779813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 62018 - 62152
Alignment:
Q  1 actccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacat 100  Q
    |||||||||| ||| ||||| ||||| ||||||| | | |||||| | ||||||||||||||||| | | |||||||  ||||||| | || ||||| |     
T  62018 actccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatcaaagtgatacaacaacattgcaagtgccagctcaagac 62117  T
Q  101 ttctcaaaccaaatatgcttcctgggcatattctt 135  Q
    |  ||||||||||| | || |||||||||||||||    
T  62118 tcatcaaaccaaatttactgcctgggcatattctt 62152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 12609771 - 12609905
Alignment:
Q  2 ctccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatt 101  Q
    ||||||||| ||| ||||| || || || |||| | | |||||| | ||||||||||||||||| | | ||||||    |||||| | ||||||||||||    
T  12609771 ctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatt 12609870  T
Q  102 tctcaaaccaaatatgcttcctgggcatattcttc 136  Q
    | ||||||||||| |||| ||||| ||||||||||    
T  12609871 tatcaaaccaaatgtgctacctggacatattcttc 12609905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 12636869 - 12637001
Alignment:
Q  4 ccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttc 103  Q
    ||||||| ||| ||||| ||||| || |||| | | |||||| | |||||| |||||||||| | | | |||||   |||||| | |||||||||||||     
T  12636869 ccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaaagtgatataacaacaatgcaagtgccaactcaacattta 12636968  T
Q  104 tcaaaccaaatatgcttcctgggcatattcttc 136  Q
    ||||||||||| || | ||||||||||||||||    
T  12636969 tcaaaccaaatgtgatgcctgggcatattcttc 12637001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University