View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_206 (Length: 268)
Name: NF1111_low_206
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_206 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 19224841 - 19225095
Alignment:
| Q |
11 |
acaaaataacagccaatatttatcatttcatatattttgttaaggcactgtataacgtgacttacaacaacttgggtggtatagcttttaggcacgatga |
110 |
Q |
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| T |
19224841 |
acaaaataaaagccaatatttatcatttcatatattttgttaaggcactgtataacgtgacttacaacaagttgggtggtatagcttttaggcacgatgg |
19224940 |
T |
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| Q |
111 |
tatggccaagtcataatcataagtgaattgtaatattcataaattcatggttcatacataagcttggtcccaatggtatcatgtcggcaataacttgttg |
210 |
Q |
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| T |
19224941 |
tatggccaagtcct--tgaaaa-tgaattgtaatattcataaattcatggttcatacataagcttggtcccaatggtatcatgtcggcaataacttgttg |
19225037 |
T |
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| Q |
211 |
aattctactttgtttttcctttccccacatgcaaatgcatgcaattgtcaaacatttt |
268 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19225038 |
aattgtactttgtttttcctttccccacatgcaaatgcatgcaattgtcaaacatttt |
19225095 |
T |
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