View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_207 (Length: 267)
Name: NF1111_low_207
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_207 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 42207823 - 42207650
Alignment:
| Q |
46 |
caaacagggtcttggcatagagtaagtttctcacgttttctttctttcaagcagaagattgaatgttcttgaataatcaagattcaagaatgaaaaggag |
145 |
Q |
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| T |
42207823 |
caaacagggtcttggcagagagtaagtttctcacgttttctttctttcaagcagaagattgaatgttcttgaataatcaagattcaagaatgaaaaagag |
42207724 |
T |
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| Q |
146 |
cattcattaacttaaatacggtggaatcaaaattccaaagttaccgtagcgagcaaaaaagtttatatttcaaa |
219 |
Q |
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| T |
42207723 |
cattcatcaacttaaatacggtggaatcaaaattccaaaattaccgtagcgaacaaaaaagtttatatttcaaa |
42207650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 42207986 - 42207953
Alignment:
| Q |
94 |
aagcagaagattgaatgttcttgaataatcaaga |
127 |
Q |
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| T |
42207986 |
aagcagaagattgaatgttcttgaataaccaaga |
42207953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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