View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_21 (Length: 504)
Name: NF1111_low_21
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 74 - 475
Target Start/End: Complemental strand, 51005771 - 51005361
Alignment:
| Q |
74 |
cttttaggaatttatctcctatatt---gtatgttaaaatttggattgatttatcgcttatggatattctttgcttcaaattgtatataggaagaaaata |
170 |
Q |
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| T |
51005771 |
cttttaggaatttatctcctatattattgtatgttaaaatttggattgatttatcgcttatggatattctttgcttcaaattgtatataggaagaaaata |
51005672 |
T |
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| Q |
171 |
aataa----gtactatcttgtaaaactaggacatgggacatggcttctttaccaacaatnnnnnnnt--agcacgacttttattttgatgggatatttgt |
264 |
Q |
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| T |
51005671 |
aataaataagtactatcttgtaaaactaggacacgggacatggcttctttaccaacaataaaaaaaataagcacgacttttattttgatgggatatttgt |
51005572 |
T |
|
| Q |
265 |
tgcttcaaatttgcatgttatacttttgagtgtaaaatgtgaacaataatgataggtttgataccttggagaattctacacttgaagtttgaagttggaa |
364 |
Q |
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| T |
51005571 |
tgcttcaaatttgcatgttatacttttgagtgtaaaatgtgaacaataatgataggtttgataccttggagaattctacacttgaagtttgaagttggaa |
51005472 |
T |
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| Q |
365 |
tccttttgtgttaaatttttgtgtgttgattagtatacataactttgatctaactttaattaagtccaacaaggatattgaaatgtgaaacacattaaaa |
464 |
Q |
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| T |
51005471 |
tccttttgtgttaaatttttgtgtgttgattagtatacataactttgatctaactttaattaagtccaacaaggatattgaaatgtgaaacacattaaaa |
51005372 |
T |
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| Q |
465 |
tcactaacaga |
475 |
Q |
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| T |
51005371 |
tcactaacaga |
51005361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 51005856 - 51005805
Alignment:
| Q |
29 |
agaaatttgtaattcattcaaggaagtataggcatatattctctgcttttag |
80 |
Q |
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| T |
51005856 |
agaaatttgtaattcattcaaggaagtataggcatatattctctgcttttag |
51005805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 38741827 - 38741859
Alignment:
| Q |
29 |
agaaatttgtaattcattcaaggaagtataggc |
61 |
Q |
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| T |
38741827 |
agaaatttgtagttcattcaaggaagtataggc |
38741859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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