View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_211 (Length: 263)
Name: NF1111_low_211
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_211 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 47911151 - 47911373
Alignment:
| Q |
28 |
caggagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgat |
127 |
Q |
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| T |
47911151 |
caggagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgat |
47911250 |
T |
|
| Q |
128 |
tattatcttggaattcctccaagcaaactgcacactcagcacgagattcttcttcttgttcagactttgcggtggtgtagatgaaagacggaatagcttt |
227 |
Q |
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| T |
47911251 |
tattatcttggaactcctccaagcaaactgcacactcagcacgaaattcttcttcttgttcagactttgcggtggtgtagatgaaagacggaatagcttt |
47911350 |
T |
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| Q |
228 |
tataacagactcgtctaagccct |
250 |
Q |
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||||||||||||||||||||||| |
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| T |
47911351 |
tataacagactcgtctaagccct |
47911373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 47899309 - 47899526
Alignment:
| Q |
31 |
gagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgattat |
130 |
Q |
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| T |
47899309 |
gagcgacacaaaggacaactagggtttgaacgaagccaaacgtcgatacaattgagatggaaagtgtgggagcaaaacggaaggatgcgaatgtgatcat |
47899408 |
T |
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| Q |
131 |
tatcttggaattcctccaagcaaactgcacactcagcacgagattcttcttcttgttcagactttgcggtggtgtagatgaaagacggaatagcttttat |
230 |
Q |
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| T |
47899409 |
tatcttcgtactcctccaagcaaacaacacactcaccacgagattcttcttcttgttcagactttgtggtggtatagatgaaggacggaatagcatatat |
47899508 |
T |
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| Q |
231 |
aacagactcgtctaagcc |
248 |
Q |
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| T |
47899509 |
aacagactcatctaagcc |
47899526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 47905986 - 47906099
Alignment:
| Q |
30 |
ggagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgatta |
129 |
Q |
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||||||||||| ||||||| ||| ||||||||| |||||||| |||||||||| | |||| ||| |||| ||||||| |||||||||||| | |||| | |
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| T |
47905986 |
ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaacatgatca |
47906085 |
T |
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| Q |
130 |
ttatcttggaattc |
143 |
Q |
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| T |
47906086 |
ttatctttgaattc |
47906099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 47908758 - 47908871
Alignment:
| Q |
30 |
ggagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgatta |
129 |
Q |
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||||||||||| ||||||| ||| ||||||||| |||||||| |||||||||| | |||| ||| |||| ||||||| |||||||||||| | |||| | |
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| T |
47908758 |
ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaacatgatca |
47908857 |
T |
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| Q |
130 |
ttatcttggaattc |
143 |
Q |
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| T |
47908858 |
ttatctttgaattc |
47908871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 31 - 248
Target Start/End: Complemental strand, 31209728 - 31209511
Alignment:
| Q |
31 |
gagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgattat |
130 |
Q |
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|||||||| | ||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||| ||||||| || ||| | || ||| ||| || |
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| T |
31209728 |
gagcgacacaaaggacagctagggttagaacgaagccaaacgtcaatacaattgagatggaaagtgtgggagcaaaacggaaggatgcgaatgggatcat |
31209629 |
T |
|
| Q |
131 |
tatcttggaattcctccaagcaaactgcacactcagcacgagattcttcttcttgttcagactttgcggtggtgtagatgaaagacggaatagcttttat |
230 |
Q |
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| T |
31209628 |
tatcttcgtactcctccaagcaaacaacacactcaccacgagattcttcttcttgttcagactttgcggtggtatagatgaaggacggaatagcatatat |
31209529 |
T |
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| Q |
231 |
aacagactcgtctaagcc |
248 |
Q |
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||||||||| |||||||| |
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| T |
31209528 |
aacagactcatctaagcc |
31209511 |
T |
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