View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_212 (Length: 263)
Name: NF1111_low_212
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_212 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 33 - 243
Target Start/End: Original strand, 34584184 - 34584394
Alignment:
| Q |
33 |
cctagctgttgcgaaggaagttgttcagaggaaattcgagaattttcataaagacgaggcagagcttcatctccatacacaatgctgagcccatccattt |
132 |
Q |
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| T |
34584184 |
cctagctgctgcgaaggaagttgttcagaggaaattcgagaattttcataaagacgaggcagagcttcatctccatacacaatgctgagcccatccattt |
34584283 |
T |
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| Q |
133 |
catggccaacatctctagggttttcctcgaccatcttataaataacctaatagaagaagagcaaaccaagagatgagacccacaatacaaaaacagcaga |
232 |
Q |
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| T |
34584284 |
catggccaacatctctagggttttcctcgaccatcttataaataacctaatagaagaagagaaaaccaagagatgagacccacaatacaaaaacagcaga |
34584383 |
T |
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| Q |
233 |
aattcttctca |
243 |
Q |
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||||| ||||| |
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| T |
34584384 |
aattcatctca |
34584394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 34047934 - 34047744
Alignment:
| Q |
45 |
gaaggaagttgttcagaggaaattcgagaattttcataaagacgaggcagagcttcatctccatacacaatgctgagcccatccatttcatggccaacat |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34047934 |
gaaggaagttgttcagaggaaattcgagaattttcataaagacgaggcagggcttcatctccatacacaacgctgagcccatccatttcatggccaacat |
34047835 |
T |
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| Q |
145 |
ctctagggttttcctcgaccatcttataaataacctaatagaagaagagcaaaccaagagatgagacccacaatacaaaaacagcagaaat |
235 |
Q |
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||| |||||||||||||||||||||| ||||||||| || ||||||||| |||| || |||||||| ||||||||||| | ||||| |||| |
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| T |
34047834 |
ctccagggttttcctcgaccatcttaaaaataaccttatcgaagaagagaaaacaaacagatgagaaccacaatacaatatcagcaaaaat |
34047744 |
T |
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